New recombinant of Tomato leaf curl New Delhi virus infecting melon in Indonesia

被引:9
作者
Wilisiani, Fariha [1 ,2 ]
Mashiko, Takaaki [1 ]
Wang, Wei-Qin [3 ]
Suzuki, Tomohiro [4 ]
Hartono, Sedyo [5 ]
Neriya, Yutaro [3 ]
Nishigawa, Hisashi [1 ,3 ]
Natsuaki, Tomohide [1 ,3 ]
机构
[1] Tokyo Univ Agr & Technol, United Grad Sch Agr Sci, Saiwai Cho, Fuchu, Tokyo 1838509, Japan
[2] Inst Agr STIPER, Fac Agr, Yogyakarta 55282, Indonesia
[3] Utsunomiya Univ, Sch Agr, Mine Machi 350, Utsunomiya, Tochigi 3218505, Japan
[4] Utsunomiya Univ, Ctr Biosci Res & Educ, Mine Machi 350, Utsunomiya, Tochigi 3218505, Japan
[5] Gadjah Mada Univ, Fac Agr, Bulaksumur 55281, Yogyakarta, Indonesia
关键词
Melon; Begomovirus; ToLCNDV; Recombination; UNIVERSAL PRIMERS; DNA-BETA; BEGOMOVIRUS; DISEASE; AMPLIFICATION; CONSTRUCTION; COMPONENTS; ALIGNMENT;
D O I
10.1007/s10327-019-00849-7
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
The complete nucleotide sequence of Tomato leaf curl New Delhi virus detected from melon in Indonesia-[Indonesia:Yogya:Melon:2015] (ToLCNDV-[ID:YG:Mel:15]) was determined. ToLCNDV-[ID:YG:Mel:15] has bipartite DNAs, and both DNAs showed highest identity to ToLCNDV-[Indonesia:Java:Cucumber:2008] (ToLCNDV-[ID:JV:Cuc:08]). However in a phylogenetic analysis based on AV1, ToLCNDV-[ID:YG:Mel:15] clustered with Squash leaf curl China virus (SLCCNV) isolates. Recombination analyses revealed that ToLCNDV-[ID:YG:Mel:15] is a recombinant between ToLCNDV and SLCCNV. Thus, the virus is a new recombinant of ToLCNDV. The infectivity of the recombinant ToLCNDV-[ID:YG:Mel:15] isolate was confirmed, and the inoculation induced mosaic on melon, but not on tomato, the primary natural host of ToLCNDV.
引用
收藏
页码:306 / 310
页数:5
相关论文
共 28 条
  • [1] BASIC LOCAL ALIGNMENT SEARCH TOOL
    ALTSCHUL, SF
    GISH, W
    MILLER, W
    MYERS, EW
    LIPMAN, DJ
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) : 403 - 410
  • [2] A Rapid and Efficient Method for Construction of an Infectious Clone of Tomato yellow leaf curl virus
    Bang, Bongjun
    Lee, Jongyun
    Kim, Sunyoung
    Park, Jungwook
    Thao Thi Nguyen
    Seo, Young-Su
    [J]. PLANT PATHOLOGY JOURNAL, 2014, 30 (03) : 310 - 315
  • [3] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
  • [4] Briddon R. W., 1994, Molecular Biotechnology, V1, P202, DOI 10.1007/BF02921559
  • [5] Universal primers for the PCR-mediated amplification of DNA β -: A molecule associated with some monopartite begomoviruses
    Briddon, RW
    Bull, SE
    Mansoor, S
    Amin, I
    Markham, PG
    [J]. MOLECULAR BIOTECHNOLOGY, 2002, 20 (03) : 315 - 318
  • [6] Revision of Begomovirus taxonomy based on pairwise sequence comparisons
    Brown, Judith K.
    Zerbini, F. Murilo
    Navas-Castillo, Jesus
    Moriones, Enrique
    Ramos-Sobrinho, Roberto
    Silva, Jose C. F.
    Fiallo-Olive, Elvira
    Briddon, Rob W.
    Hernandez-Zepeda, Cecilia
    Idris, Ali
    Malathi, V. G.
    Martin, Darren P.
    Rivera-Bustamante, Rafael
    Ueda, Shigenori
    Varsani, Arvind
    [J]. ARCHIVES OF VIROLOGY, 2015, 160 (06) : 1593 - 1619
  • [7] Neighbor-Net: An agglomerative method for the construction of phylogenetic networks
    Bryant, D
    Moulton, V
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2004, 21 (02) : 255 - 265
  • [8] Supervirulent pseudorecombination and asymmetric synergism between genomic components of two distinct species of begomovirus associated with severe tomato leaf curl disease in India
    Chakraborty, S.
    Vanitharani, R.
    Chattopadhyay, B.
    Fauquet, C. M.
    [J]. JOURNAL OF GENERAL VIROLOGY, 2008, 89 : 818 - 828
  • [9] MUSCLE: multiple sequence alignment with high accuracy and high throughput
    Edgar, RC
    [J]. NUCLEIC ACIDS RESEARCH, 2004, 32 (05) : 1792 - 1797
  • [10] A Novel Strain of Tomato Leaf Curl New Delhi Virus Has Spread to the Mediterranean Basin
    Fortes, Isabel M.
    Sanchez-Campos, Sonia
    Fiallo-Olive, Elvira
    Diaz-Pendon, Juan A.
    Navas-Castillo, Jesus
    Moriones, Enrique
    [J]. VIRUSES-BASEL, 2016, 8 (11):