QSAR models for prediction study of HIV protease inhibitors using support vector machines, neural networks and multiple linear regression

被引:36
作者
Darnag, Rachid [1 ]
Minaoui, Brahim [1 ]
Fakir, Mohamed [2 ]
机构
[1] Univ Sultan Moulay Slimane, Fac Sci & Tech, Lab Traitement Informat & Telecommun, Dept Phys, BP 523, Beni Mellal, Morocco
[2] Univ Sultan Moulay Slimane, Fac Sci & Tech, Dept Informat, BP 523, Beni Mellal, Morocco
关键词
QSAR; HIV protease inhibitors; Support vector machines; Neural networks; DERIVATIVES; RETENTION; SYSTEMS;
D O I
10.1016/j.arabjc.2012.10.021
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Support vector machines (SVM) represent one of the most promising Machine Learning (ML) tools that can be applied to develop a predictive quantitative structure-activity relationship (QSAR) models using molecular descriptors. Multiple linear regression (MLR) and artificial neural networks (ANNs) were also utilized to construct quantitative linear and non linear models to compare with the results obtained by SVM. The prediction results are in good agreement with the experimental value of HIV activity; also, the results reveal the superiority of the SVM over MLR and ANN model. The contribution of each descriptor to the structure-activity relationships was evaluated. (C) 2014 Production and hosting by Elsevier B.V. on behalf of King Saud University.
引用
收藏
页码:S600 / S608
页数:9
相关论文
共 42 条
[1]   APPLICATIONS OF NEURAL NETWORKS IN QUANTITATIVE STRUCTURE-ACTIVITY-RELATIONSHIPS OF DIHYDROFOLATE-REDUCTASE INHIBITORS [J].
ANDREA, TA ;
KALAYEH, H .
JOURNAL OF MEDICINAL CHEMISTRY, 1991, 34 (09) :2824-2836
[2]  
[Anonymous], 2002, Internet Electronic Journal of Molecular Design
[3]   Drug design by machine learning: support vector machines for pharmaceutical data analysis [J].
Burbidge, R ;
Trotter, M ;
Buxton, B ;
Holden, S .
COMPUTERS & CHEMISTRY, 2001, 26 (01) :5-14
[4]   A tutorial on Support Vector Machines for pattern recognition [J].
Burges, CJC .
DATA MINING AND KNOWLEDGE DISCOVERY, 1998, 2 (02) :121-167
[5]  
Chang C.-C., LIBSVM: a Library for Support Vector Machines
[6]   A support vector machine classifier with rough set-based feature selection for breast cancer diagnosis [J].
Chen, Hui-Ling ;
Yang, Bo ;
Liu, Jie ;
Liu, Da-You .
EXPERT SYSTEMS WITH APPLICATIONS, 2011, 38 (07) :9014-9022
[7]  
Chen Nianyi, 2004, SUPPORT VECTOR MACHI
[8]   USE OF A NEURAL-NETWORK TO DETERMINE THE BOILING-POINT OF ALKANES [J].
CHERQAOUI, D ;
VILLEMIN, D .
JOURNAL OF THE CHEMICAL SOCIETY-FARADAY TRANSACTIONS, 1994, 90 (01) :97-102
[9]   Structure musk odour relationship studies of tetralin and indan compounds using neural networks [J].
Cherqaoui, D ;
Esseffar, M ;
Villemin, D ;
Cense, JM ;
Chastrette, M ;
Zakarya, D .
NEW JOURNAL OF CHEMISTRY, 1998, 22 (08) :839-843
[10]   Prediction of human immunodeficiency virus protease cleavage sites in proteins [J].
Chou, KC .
ANALYTICAL BIOCHEMISTRY, 1996, 233 (01) :1-14