The Nuclear Pore Complex in Cell Type-Specific Chromatin Structure and Gene Regulation

被引:38
作者
Sun, Jiayu [1 ,2 ]
Shi, Yuming [1 ,2 ]
Yildirim, Eda [1 ,2 ]
机构
[1] Duke Univ, Dept Cell Biol, Sch Med, Durham, NC 27710 USA
[2] Duke Canc Inst, Durham, NC 27710 USA
关键词
MOLECULAR ARCHITECTURE; TRANSCRIPTIONAL MEMORY; X-INACTIVATION; NUCLEOPORIN; EXPRESSION; ORGANIZATION; NUP98; PROTEINS; NUP153; RNA;
D O I
10.1016/j.tig.2019.05.006
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Nuclear pore complex (NPC)-mediated nucleocytoplasmic trafficking is essential for key cellular processes, such as cell growth, cell differentiation, and gene regulation. The NPC has also been viewed as a nuclear architectural platform that impacts genome function and gene expression by mediating spatial and temporal coordination between transcription factors, chromatin regulatory proteins, and transcription machinery. Recent findings have uncovered differential and cell type-specific expression and distinct chromatin-binding patterns of individual NPC components known as nucleoporins (Nups). Here, we examine recent studies that investigate the functional roles of NPCs and Nups in transcription, chromatin organization, and epigenetic gene regulation in the context of development and disease.
引用
收藏
页码:579 / 588
页数:10
相关论文
共 50 条
  • [21] An RNA Polymerase III General Transcription Factor Engages in Cell Type-Specific Chromatin Looping
    de Llobet Cucalon, Lara
    Di Vona, Chiara
    Morselli, Marco
    Vezzoli, Marco
    Montanini, Barbara
    Teichmann, Martin
    de la Luna, Susana
    Ferrari, Roberto
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (04)
  • [22] Implications of a multiscale structure of the yeast nuclear pore complex
    Akey, Christopher W.
    Echeverria, Ignacia
    Ouch, Christna
    Nudelman, Ilona
    Shi, Yi
    Wang, Junjie
    Chait, Brian T.
    Sali, Andrej
    Fernandez-Martinez, Javier
    Rout, Michael P.
    MOLECULAR CELL, 2023, 83 (18) : 3283 - 3302.e5
  • [23] Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines
    Ori, Alessandro
    Banterle, Niccolo
    Iskar, Murat
    Andres-Pons, Amparo
    Escher, Claudia
    Bui, Huy Khanh
    Sparks, Lenore
    Solis-Mezarino, Victor
    Rinner, Oliver
    Bork, Peer
    Lemke, Edward A.
    Beck, Martin
    MOLECULAR SYSTEMS BIOLOGY, 2013, 9
  • [24] Cell Type-Specific Transcriptomics in the Brain
    Okaty, Benjamin W.
    Sugino, Ken
    Nelson, Sacha B.
    JOURNAL OF NEUROSCIENCE, 2011, 31 (19) : 6939 - 6943
  • [25] Structure and Assembly of the Nuclear Pore Complex
    Hampoelz, Bernhard
    Andres-Pons, Amparo
    Kastritis, Panagiotis
    Beck, Martin
    ANNUAL REVIEW OF BIOPHYSICS, VOL 48, 2019, 48 : 515 - 536
  • [26] Structure and Function of the Nuclear Pore Complex
    Petrovic, Stefan
    Mobbs, George W.
    Bley, Christopher J.
    Nie, Si
    Patke, Alina
    Hoelz, Andre
    COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY, 2022, 14 (12):
  • [27] The Structure of the Nuclear Pore Complex (An Update)
    Lin, Daniel H.
    Hoelz, Andre
    ANNUAL REVIEW OF BIOCHEMISTRY, VOL 88, 2019, 88 : 725 - 783
  • [28] Cell type-specific regulation of inhibition via cannabinoid type 1 receptors in rat neocortex
    De-May, Claire L.
    Ali, Afia B.
    JOURNAL OF NEUROPHYSIOLOGY, 2013, 109 (01) : 216 - 224
  • [29] Metazoan nuclear pore complexes in gene regulation and genome stability*
    Nobari, Parisa
    Doye, Valerie
    Boumendil, Charlene
    DNA REPAIR, 2023, 130
  • [30] Structure, Dynamics, Evolution, and Function of a Major Scaffold Component in the Nuclear Pore Complex
    Sampathkumar, Parthasarathy
    Kim, Seung Joong
    Upla, Paula
    Rice, William J.
    Phillips, Jeremy
    Timney, Benjamin L.
    Pieper, Ursula
    Bonanno, Jeffrey B.
    Fernandez-Martinez, Javier
    Hakhverdyan, Zhanna
    Ketaren, Natalia E.
    Matsui, Tsutomu
    Weiss, Thomas M.
    Stokes, David L.
    Sauder, J. Michael
    Burley, Stephen K.
    Sali, Andrej
    Rout, Michael P.
    Almo, Steven C.
    STRUCTURE, 2013, 21 (04) : 560 - 571