A Stochastic Algorithm for the Isobaric-Isothermal Ensemble with Ewald Summations for All Long Range Forces

被引:128
作者
Di Pierro, Michele [1 ]
Elber, Ron [2 ,3 ]
Leimkuhler, Benedict [4 ]
机构
[1] Rice Univ, BioSci Res Collaborat, Ctr Theoret Biol Phys, Houston, TX 77030 USA
[2] Univ Texas Austin, Inst Computat Engn & Sci, Austin, TX 78712 USA
[3] Univ Texas Austin, Dept Chem, Austin, TX 78712 USA
[4] Univ Edinburgh, Sch Math, Edinburgh EH9 3FD, Midlothian, Scotland
基金
英国工程与自然科学研究理事会;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; PARTICLE MESH EWALD; CONSTANT-PRESSURE; POTENTIAL FUNCTIONS; INTEGRATION; CONSTRAINTS;
D O I
10.1021/acs.jctc.5b00648
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present an algorithm termed COMPEL (COnstant Molecular Pressure with Ewald sum for Long range forces) to conduct simulations in the NPT ensemble. The algorithm combines novel features recently proposed in the literature to obtain a highly efficient and accurate numerical integrator. COMPEL exploits the concepts of molecular pressure, rapid stochastic relaxation to equilibrium, exact calculation of the contribution to the pressure of long-range nonbonded forces with Ewald summation, and the use of Trotter expansion to generate a robust, highly stable, symmetric, and accurate algorithm. Explicit implementation in the MOIL program and illustrative numerical examples are discussed.
引用
收藏
页码:5624 / 5637
页数:14
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