Exome-wide rare variant analysis in familial essential tremor

被引:12
作者
Diez-Fairen, Monica [1 ]
Houle, Gabrielle [2 ,3 ]
Ortega-Cubero, Sara [4 ]
Bandres-Ciga, Sara [5 ,6 ]
Alvarez, Ignacio [1 ]
Carcel, Maria [1 ]
Ibanez, Laura [7 ]
Fernandez, Maria Victoria [7 ]
Budde, John P. [7 ]
Trotta, Jean-Remi [8 ,9 ]
Tonda, Raul [8 ,9 ]
Chong, Jessica X. [10 ]
Bamshad, Michael J. [10 ,11 ,12 ]
Nickerson, Deborah A. [12 ]
Aguilar, Miquel [1 ]
Tartari, Juan P. [1 ]
Gironell, Alexandre [13 ,14 ]
Garcia-Martin, Elena [15 ]
Agundez, Jose A. G. [15 ]
Alonso-Navarro, Hortensia [16 ]
Javier Jimenez-Jimenez, Felix [16 ]
Fernandez, Manel [17 ]
Valldeoriola, Francesc [18 ,19 ]
Jose Marti, Maria [18 ,19 ]
Tolosa, Eduard [18 ,19 ]
Coria, Francisco [20 ]
Pastor, Maria A. [21 ]
Vilarino-Guell, Carles [22 ]
Rajput, Alex [23 ]
Dion, Patrick A. [24 ]
Cruchaga, Carlos [7 ]
Rouleau, Guy A. [2 ,24 ]
Pastor, Pau [1 ]
机构
[1] Univ Hosp Matua Terrassa, Movement Disorders Unit, Fundacio Docencia & Recerca MutuaTerrassa, Dept Neurol, Barcelona, Spain
[2] McGill Univ, Dept Human Genet, Montreal, PQ, Canada
[3] McGill Univ, Montreal Neurol Inst, Montreal, PQ, Canada
[4] Hosp Univ Burgos, Dept Neurol & Neurosurg, Burgos, Spain
[5] NIA, Mol Genet Sect, Lab Neurogenet, NIH, Bldg 10, Bethesda, MD 20892 USA
[6] Inst Invest Biosanitaria Granada Ibs GRANADA, Granada, Spain
[7] Washington Univ, Sch Med, Dept Psychiat, NeuroGen & Informat, St Louis, MO 63110 USA
[8] Barcelona Inst Sci & Technol BIST, Ctr Genom Regulat, Ctr Nacl Anal Genbm CNAG CRG, Barcelona, Spain
[9] Univ Pompeu Fabra UPF, Barcelona, Spain
[10] Univ Washington, Dept Pediat, Div Genet Med, Seattle, WA 98195 USA
[11] Seattle Childrens Hosp, Seattle, WA 98105 USA
[12] Univ Washington, Dept Genome Sci, Seattle, WA 98195 USA
[13] Hosp Santa Creu & Sant Pau, Movement Disorders Unit, Neurol Dept, Barcelona 08026, Spain
[14] St Pau Biomed Res Inst, Barcelona 08026, Spain
[15] Inst Salud Carlos III, UNEx ARADyAL, Univ Inst Mol Pathol Biomarkers, Caceres, Spain
[16] Hosp Univ Sureste, Sect Neurol, Madrid, Spain
[17] Univ Barcelona, Minist Sci Innovat & Univ, Maria Maeztu Unit Excellence, Inst Neurosci, MDM-2017-0729, Barcelona, Spain
[18] IDIBAPS, Hosp Clin, Dept Neurol, Parkinsons Dis & Movement Disorders Unit, Barcelona, Spain
[19] Hosp Clin Barcelona, Ctr Invest Biomed Red Enfermedades Neurodegenerat, Barcelona, Spain
[20] Son Espases Univ Hosp, Serv Neurol, Clin Nervous Disorders, Palma De Mallorca, Spain
[21] Clin Univ Navarra, Dept Neurol, Pamplona, Spain
[22] Univ British Columbia, Dept Med Genet, Vancouver, BC, Canada
[23] Univ Saskatchewan, Saskatchewan Hlth Author, Saskatchewan Movement Disorders Program, Saskatoon, SK, Canada
[24] McGill Univ, Dept Neurol & Neurosurg, Montreal, PQ H3A 2B4, Canada
关键词
Essential tremor; Genetic risk; WES; Rare variants; MMP10; CONSENSUS STATEMENT; GENE; SUSCEPTIBILITY; MYELINATION; ASSOCIATION; MUTATIONS; REGULATOR; PARKINSON; SLC1A2; COMMON;
D O I
10.1016/j.parkreldis.2020.11.021
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Introduction: Essential tremor (ET) is one of the most common movement disorders. Despite its high prevalence and heritability, its genetic etiology remains elusive with only a few susceptibility genes identified and poorly replicated. Our aim was to find novel candidate genes involved in ET predisposition through whole exome sequencing. Methods: We studied eight multigenerational families (N = 40 individuals) with an autosomal-dominant inheritance using a comprehensive strategy combining whole exome sequencing followed by case-control association testing of prioritized variants in a separate cohort comprising 521 ET cases and 596 controls. We further performed gene-based burden analyses in an additional dataset comprising 789 ET patients and 770 healthy individuals to investigate whether there was an enrichment of rare deleterious variants within our candidate genes. Results: Fifteen variants co-segregated with disease status in at least one of the families, among which rs749875462 in CCDC183, rs535864157 in MMP10 and rs114285050 in GPR151 showed a nominal association with ET. However, we found no significant enrichment of rare variants within these genes in cases compared with controls. Interestingly, MMP10 protein is involved in the inflammatory response to neuronal damage and has been previously associated with other neurological disorders. Conclusions: We prioritized a set of promising genes, especially MMP10, for further genetic and functional studies in ET. Our study suggests that rare deleterious coding variants that markedly increase susceptibility to ET are likely to be found in many genes. Future studies are needed to replicate and further infer biological mechanisms and potential disease causality for our identified genes.
引用
收藏
页码:109 / 116
页数:8
相关论文
共 41 条
[1]   SCN4A pore mutation pathogenetically contributes to autosomal dominant essential tremor and may increase susceptibility to epilepsy [J].
Bergareche, Alberto ;
Bednarz, Marcin ;
Sanchez, Elena ;
Krebs, Catharine E. ;
Ruiz-Martinez, Javier ;
De La Riva, Patricia ;
Makarov, Vladimir ;
Gorostidi, Ana ;
Jurkat-Rott, Karin ;
Felix Marti-Masso, Jose ;
Paisan-Ruiz, Coro .
HUMAN MOLECULAR GENETICS, 2015, 24 (24) :7111-7120
[2]   Consensus Statement on the Classification of Tremors. From the Task Force on Tremor of the International Parkinson and Movement Disorder Society [J].
Bhatia, Kailash P. ;
Bain, Peter ;
Bajaj, Nin ;
Elble, Rodger J. ;
Hallett, Mark ;
Louis, Elan D. ;
Raethjen, Jan ;
Stamelou, Maria ;
Testa, Claudia M. ;
Deuschl, Guenther .
MOVEMENT DISORDERS, 2018, 33 (01) :75-87
[3]   The impact of rare and low-frequency genetic variants in common disease [J].
Bomba, Lorenzo ;
Walter, Klaudia ;
Soranzo, Nicole .
GENOME BIOLOGY, 2017, 18
[4]   Friends or Foes: Matrix Metalloproteinases and Their Multifaceted Roles in Neurodegenerative Diseases [J].
Brkic, Marjana ;
Balusu, Sriram ;
Libert, Claude ;
Vandenbroucke, Roosmarijn E. .
MEDIATORS OF INFLAMMATION, 2015, 2015
[5]   Vascular MMP-9/TIMP-2 and Neuronal MMP-10 Up-Regulation in Human Brain after Stroke: A Combined Laser Microdissection and Protein Array Study [J].
Cuadrado, Eloy ;
Rosell, Anna ;
Penalba, Anna ;
Slevin, Mark ;
Alvarez-Sabin, Jose ;
Ortega-Aznar, Arantxa ;
Montaner, Joan .
JOURNAL OF PROTEOME RESEARCH, 2009, 8 (06) :3191-3197
[6]   Consensus statement of the Movement Disorder Society on tremor [J].
Deuschl, G ;
Bain, P ;
Brin, M .
MOVEMENT DISORDERS, 1998, 13 :2-23
[7]  
Deuschl G., 1995, Handbook of Tremor Disorders, P195
[8]   Genome-wide estimates of heritability and genetic correlations in essential tremor [J].
Diez-Fairen, Monica ;
Bandres-Ciga, Sara ;
Houle, Gabrielle ;
Nalls, Mike A. ;
Girard, Simon L. ;
Dion, Patrick A. ;
Blauwendraat, Cornelis ;
Singleton, Andrew B. ;
Rouleau, Guy A. ;
Pastor, Pau .
PARKINSONISM & RELATED DISORDERS, 2019, 64 :262-267
[9]   Demographic history and rare allele sharing among human populations [J].
Gravel, Simon ;
Henn, Brenna M. ;
Gutenkunst, Ryan N. ;
Indap, Amit R. ;
Marth, Gabor T. ;
Clark, Andrew G. ;
Yu, Fuli ;
Gibbs, Richard A. ;
Bustamante, Carlos D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (29) :11983-11988
[10]   Mapping of a familial essential tremor gene, FET1, to chromosome 3q13 [J].
Gulcher, JR ;
Jonsson, P ;
Kong, A ;
Kristjansson, K ;
Frigge, ML ;
Karason, A ;
Einarsdottir, IE ;
Stefansson, H ;
Einarsdottir, AS ;
Sigurdardottir, S ;
Baldursson, S ;
Bjornsdottir, S ;
Hrafnkelsdottir, SM ;
Jakobsson, F ;
Benedickz, J ;
Stefansson, K .
NATURE GENETICS, 1997, 17 (01) :84-87