The complete mitochondrial genome of Lerema accius and its phylogenetic implications
被引:21
|
作者:
Cong, Qian
论文数: 0引用数: 0
h-index: 0
机构:
Univ Texas SW Med Ctr Dallas, Dept Biophys & Biochem, Dallas, TX 75390 USAUniv Texas SW Med Ctr Dallas, Dept Biophys & Biochem, Dallas, TX 75390 USA
Cong, Qian
[1
]
Grishin, Nick V.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Texas SW Med Ctr Dallas, Dept Biophys & Biochem, Dallas, TX 75390 USA
Univ Texas SW Med Ctr Dallas, Howard Hughes Med Ctr, Dallas, TX 75390 USAUniv Texas SW Med Ctr Dallas, Dept Biophys & Biochem, Dallas, TX 75390 USA
Grishin, Nick V.
[1
,2
]
机构:
[1] Univ Texas SW Med Ctr Dallas, Dept Biophys & Biochem, Dallas, TX 75390 USA
[2] Univ Texas SW Med Ctr Dallas, Howard Hughes Med Ctr, Dallas, TX 75390 USA
来源:
PEERJ
|
2016年
/
4卷
基金:
美国国家卫生研究院;
关键词:
Illumina sequencing;
Clouded Skipper;
De novo assembly;
Hesperiinae;
HESPERIIDAE LEPIDOPTERA-HESPERIOIDEA;
PAPILIO-POLYTES;
SPECIATION;
EVOLUTION;
RECONSTRUCTION;
SUBFAMILIES;
GEOMETRIDAE;
SYSTEMATICS;
ADAPTATION;
SEQUENCE;
D O I:
10.7717/peerj.1546
中图分类号:
O [数理科学和化学];
P [天文学、地球科学];
Q [生物科学];
N [自然科学总论];
学科分类号:
07 ;
0710 ;
09 ;
摘要:
Butterflies and moths (Lepidoptera) are becoming model organisms for genetics and evolutionary biology. Decoding the Lepidoptera genomes, both nuclear and mitochondrial, is an essential step in these studies. Here we describe a protocol to assemble mitogenomes from Next Generation Sequencing reads obtained through whole-genome sequencing and report the 15,338 bp mitogenome of Lerema accius. The mitogenome is AT-rich and encodes 13 proteins, 22 transfer-RNAs, and two ribosomal-RNAs, with a gene order typical for Lepidoptera mitogenomes. A phylogenetic study based on the protein sequences using both Bayesian Inference and Maximum Likelihood methods consistently place Lerema accius with other grass skippers (Hesperiinae).
机构:
South China Agr Univ, Lab Plant Nematol, Guangzhou, Guangdong, Peoples R China
South China Agr Univ, Guangdong Prov Key Lab Microbial Signals & Dis Co, Guangzhou, Guangdong, Peoples R ChinaSouth China Agr Univ, Lab Plant Nematol, Guangzhou, Guangdong, Peoples R China
Sun, Longhua
Zhuo, Kan
论文数: 0引用数: 0
h-index: 0
机构:
South China Agr Univ, Lab Plant Nematol, Guangzhou, Guangdong, Peoples R China
South China Agr Univ, Guangdong Prov Key Lab Microbial Signals & Dis Co, Guangzhou, Guangdong, Peoples R ChinaSouth China Agr Univ, Lab Plant Nematol, Guangzhou, Guangdong, Peoples R China
Zhuo, Kan
Lin, Borong
论文数: 0引用数: 0
h-index: 0
机构:
South China Agr Univ, Lab Plant Nematol, Guangzhou, Guangdong, Peoples R China
South China Agr Univ, Guangdong Prov Key Lab Microbial Signals & Dis Co, Guangzhou, Guangdong, Peoples R ChinaSouth China Agr Univ, Lab Plant Nematol, Guangzhou, Guangdong, Peoples R China
Lin, Borong
Wang, Honghong
论文数: 0引用数: 0
h-index: 0
机构:
South China Agr Univ, Lab Plant Nematol, Guangzhou, Guangdong, Peoples R China
South China Agr Univ, Guangdong Prov Key Lab Microbial Signals & Dis Co, Guangzhou, Guangdong, Peoples R ChinaSouth China Agr Univ, Lab Plant Nematol, Guangzhou, Guangdong, Peoples R China
Wang, Honghong
Liao, Jinling
论文数: 0引用数: 0
h-index: 0
机构:
South China Agr Univ, Lab Plant Nematol, Guangzhou, Guangdong, Peoples R China
South China Agr Univ, Guangdong Prov Key Lab Microbial Signals & Dis Co, Guangzhou, Guangdong, Peoples R ChinaSouth China Agr Univ, Lab Plant Nematol, Guangzhou, Guangdong, Peoples R China
机构:
Sanming Univ, Med Plant Exploitat & Utilizat Engn Res Ctr, Sanming 365004, Peoples R China
Sanming Univ, Fujian Prov Key Lab Resources & Environm Monitori, Sanming 365004, Peoples R ChinaSanming Univ, Med Plant Exploitat & Utilizat Engn Res Ctr, Sanming 365004, Peoples R China
Shi, Qing-hui
Sun, Gang
论文数: 0引用数: 0
h-index: 0
机构:
Sanming Univ, Med Plant Exploitat & Utilizat Engn Res Ctr, Sanming 365004, Peoples R China
Sanming Univ, Fujian Prov Key Lab Resources & Environm Monitori, Sanming 365004, Peoples R ChinaSanming Univ, Med Plant Exploitat & Utilizat Engn Res Ctr, Sanming 365004, Peoples R China
Sun, Gang
Fang, Yan
论文数: 0引用数: 0
h-index: 0
机构:
Sanming Univ, Med Plant Exploitat & Utilizat Engn Res Ctr, Sanming 365004, Peoples R China
Sanming Univ, Fujian Prov Key Lab Resources & Environm Monitori, Sanming 365004, Peoples R ChinaSanming Univ, Med Plant Exploitat & Utilizat Engn Res Ctr, Sanming 365004, Peoples R China
Fang, Yan
Zhang, Li-hua
论文数: 0引用数: 0
h-index: 0
机构:
Sanming Univ, Fujian Prov Key Lab Resources & Environm Monitori, Sanming 365004, Peoples R ChinaSanming Univ, Med Plant Exploitat & Utilizat Engn Res Ctr, Sanming 365004, Peoples R China
Zhang, Li-hua
Zhang, Jun-cheng
论文数: 0引用数: 0
h-index: 0
机构:
Sanming Univ, Med Plant Exploitat & Utilizat Engn Res Ctr, Sanming 365004, Peoples R China
Sanming Univ, Fujian Prov Key Lab Resources & Environm Monitori, Sanming 365004, Peoples R ChinaSanming Univ, Med Plant Exploitat & Utilizat Engn Res Ctr, Sanming 365004, Peoples R China
Zhang, Jun-cheng
MITOCHONDRIAL DNA PART B-RESOURCES,
2020,
5
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: 1567
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1569