The complete mitochondrial genome of Lerema accius and its phylogenetic implications

被引:21
|
作者
Cong, Qian [1 ]
Grishin, Nick V. [1 ,2 ]
机构
[1] Univ Texas SW Med Ctr Dallas, Dept Biophys & Biochem, Dallas, TX 75390 USA
[2] Univ Texas SW Med Ctr Dallas, Howard Hughes Med Ctr, Dallas, TX 75390 USA
来源
PEERJ | 2016年 / 4卷
基金
美国国家卫生研究院;
关键词
Illumina sequencing; Clouded Skipper; De novo assembly; Hesperiinae; HESPERIIDAE LEPIDOPTERA-HESPERIOIDEA; PAPILIO-POLYTES; SPECIATION; EVOLUTION; RECONSTRUCTION; SUBFAMILIES; GEOMETRIDAE; SYSTEMATICS; ADAPTATION; SEQUENCE;
D O I
10.7717/peerj.1546
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Butterflies and moths (Lepidoptera) are becoming model organisms for genetics and evolutionary biology. Decoding the Lepidoptera genomes, both nuclear and mitochondrial, is an essential step in these studies. Here we describe a protocol to assemble mitogenomes from Next Generation Sequencing reads obtained through whole-genome sequencing and report the 15,338 bp mitogenome of Lerema accius. The mitogenome is AT-rich and encodes 13 proteins, 22 transfer-RNAs, and two ribosomal-RNAs, with a gene order typical for Lepidoptera mitogenomes. A phylogenetic study based on the protein sequences using both Bayesian Inference and Maximum Likelihood methods consistently place Lerema accius with other grass skippers (Hesperiinae).
引用
收藏
页数:12
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