Modelling bistable tumour population dynamics to design effective treatment strategies

被引:13
作者
Akhmetzhanov, Andrei R. [1 ,2 ]
Kim, Jong Wook [3 ,4 ,5 ,6 ]
Sullivan, Ryan [7 ,8 ]
Beckman, Robert A. [9 ,10 ,11 ]
Tamayo, Pablo [3 ,4 ,5 ,6 ]
Yeang, Chen-Hsiang [1 ]
机构
[1] Acad Sinica, Inst Stat Sci, 128 Acad Rd,Sec 2, Taipei 11529, Taiwan
[2] Hokkaido Univ, Grad Sch Med, Sapporo, Hokkaido, Japan
[3] Broad Inst Harvard & MIT, 450 Main St, Cambridge, MA 02142 USA
[4] Univ Calif San Diego, Sch Med, Div Med Genet, La Jolla, CA USA
[5] Univ Calif San Diego, Moores Canc Ctr, La Jolla, CA 92093 USA
[6] Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA
[7] Massachusetts Gen Hosp, Boston, MA 02114 USA
[8] Harvard Med Sch, Boston, MA 02115 USA
[9] Georgetown Univ, Med Ctr, Lombardi Comprehens Canc Ctr, Dept Oncol, Washington, DC 20007 USA
[10] Georgetown Univ, Med Ctr, Lombardi Comprehens Canc Ctr, Dept Biostat Bioinformat & Biomath, Washington, DC 20007 USA
[11] Georgetown Univ, Med Ctr, Innovat Ctr Biomed Informat, Washington, DC 20007 USA
关键词
Tumour management; Targeted treatments; Drug resistance; State transitions; Pathway regulation; Oncogenic states; CANCER DRUG-RESISTANCE; ACQUIRED-RESISTANCE; EVOLUTION; INHIBITION; MELANOMA; HETEROGENEITY; STATE; VEMURAFENIB; MUTATIONS; PHENOTYPE;
D O I
10.1016/j.jtbi.2019.05.005
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Despite recent advances in targeted drugs and immunotherapy, cancer remains "the emperor of all maladies" due to almost inevitable emergence of resistance. Drug resistance is thought to be driven by genetic alterations and/or dynamic plasticity that deregulate pathway activities and regulatory programs of a highly heterogeneous tumour. In this study, we propose a modelling framework to simulate population dynamics of heterogeneous tumour cells with reversible drug resistance. Drug sensitivity of a tumour cell is determined by its internal states, which are demarcated by coordinated activities of multiple interconnected oncogenic pathways. Transitions between cellular states depend on the effects of targeted drugs and regulatory relations between the pathways. Under this framework, we build a simple model to capture drug resistance characteristics of BRAF-mutant melanoma, where two cell states are determined by two mutually inhibitory - main and alternative - pathways. We assume that cells with an activated main pathway are proliferative yet sensitive to the BRAF inhibitor, and cells with an activated alternative pathway are quiescent but resistant to the drug. We describe a dynamical process of tumour growth under various drug regimens using the explicit solutions of mean-field equations. Based on these solutions, we compare efficacy of three treatment strategies from simulated data: static treatments with continuous and constant dosages, periodic treatments with regular intermittent active phases and drug holidays, and treatments derived from optimal control theory (OCT). Periodic treatments outperform static treatments with a considerable margin, while treatments based on OCT outperform the best periodic treatment. Our results provide insights regarding optimal cancer treatment modalities for heterogeneous tumours, and may guide the development of optimal therapeutic strategies to circumvent plastic drug resistance. They can also be used to evaluate the efficacy of suboptimal treatments that may account for side effects of the treatment and the cost of its application. (C) 2019 The Authors. Published by Elsevier Ltd.
引用
收藏
页码:88 / 102
页数:15
相关论文
共 72 条
[21]   Cancer phenotype as the outcome of an evolutionary game between normal and malignant cells [J].
Dingli, D. ;
Chalub, F. A. C. C. ;
Santos, F. C. ;
Van Segbroeck, S. ;
Pacheco, J. M. .
BRITISH JOURNAL OF CANCER, 2009, 101 (07) :1130-1136
[22]   Encorafenib plus binimetinib versus vemurafenib or encorafenib in patients with BRAF-mutant melanoma (COLUMBUS): a multicentre, open-label, randomised phase 3 trial [J].
Dummer, Reinhard ;
Ascierto, Paolo A. ;
Gogas, Helen J. ;
Arance, Ana ;
Mandala, Mario ;
Liszkay, Gabriella ;
Garbe, Claus ;
Schadendorf, Dirk ;
Krajsova, Ivana ;
Gutzmer, Ralf ;
Chiarion-Sileni, Vanna ;
Dutriaux, Caroline ;
de Groot, Jan Willem B. ;
Yamazaki, Naoya ;
Loquai, Carmen ;
Moutouh-de Parseval, Laure A. ;
Pickard, Michael D. ;
Sandor, Victor ;
Robert, Caroline ;
Flaherty, Keith T. .
LANCET ONCOLOGY, 2018, 19 (05) :603-615
[23]   New response evaluation criteria in solid tumours: Revised RECIST guideline (version 1.1) [J].
Eisenhauer, E. A. ;
Therasse, P. ;
Bogaerts, J. ;
Schwartz, L. H. ;
Sargent, D. ;
Ford, R. ;
Dancey, J. ;
Arbuck, S. ;
Gwyther, S. ;
Mooney, M. ;
Rubinstein, L. ;
Shankar, L. ;
Dodd, L. ;
Kaplan, R. ;
Lacombe, D. ;
Verweij, J. .
EUROPEAN JOURNAL OF CANCER, 2009, 45 (02) :228-247
[24]   The value of monitoring to control evolving populations [J].
Fischer, Andrej ;
Vazquez-Garcia, Ignacio ;
Mustonen, Ville .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2015, 112 (04) :1007-1012
[25]   Evolution of Resistance to Targeted Anti-Cancer Therapies during Continuous and Pulsed Administration Strategies [J].
Foo, Jasmine ;
Michor, Franziska .
PLOS COMPUTATIONAL BIOLOGY, 2009, 5 (11)
[26]   Circumventing Cancer Drug Resistance in the Era of Personalized Medicine [J].
Garraway, Levi A. ;
Jaenne, Pasi A. .
CANCER DISCOVERY, 2012, 2 (03) :214-226
[27]   Adaptive Therapy [J].
Gatenby, Robert A. ;
Silva, Ariosto S. ;
Gillies, Robert J. ;
Frieden, B. Roy .
CANCER RESEARCH, 2009, 69 (11) :4894-4903
[28]   Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing [J].
Gerlinger, Marco ;
Rowan, Andrew J. ;
Horswell, Stuart ;
Larkin, James ;
Endesfelder, David ;
Gronroos, Eva ;
Martinez, Pierre ;
Matthews, Nicholas ;
Stewart, Aengus ;
Tarpey, Patrick ;
Varela, Ignacio ;
Phillimore, Benjamin ;
Begum, Sharmin ;
McDonald, Neil Q. ;
Butler, Adam ;
Jones, David ;
Raine, Keiran ;
Latimer, Calli ;
Santos, Claudio R. ;
Nohadani, Mahrokh ;
Eklund, Aron C. ;
Spencer-Dene, Bradley ;
Clark, Graham ;
Pickering, Lisa ;
Stamp, Gordon ;
Gore, Martin ;
Szallasi, Zoltan ;
Downward, Julian ;
Futreal, P. Andrew ;
Swanton, Charles .
NEW ENGLAND JOURNAL OF MEDICINE, 2012, 366 (10) :883-892
[29]   Clonal evolution in cancer [J].
Greaves, Mel ;
Maley, Carlo C. .
NATURE, 2012, 481 (7381) :306-313
[30]   The hallmarks of cancer [J].
Hanahan, D ;
Weinberg, RA .
CELL, 2000, 100 (01) :57-70