Dawning of the age of genomics for platelet granule disorders: improving insight, diagnosis and management

被引:17
作者
Bariana, Tadbir K. [1 ,2 ,3 ,4 ]
Ouwehand, Willem H. [4 ,5 ,6 ,7 ]
Guerrero, Jose A. [4 ,5 ]
Gomez, Keith [1 ,2 ]
机构
[1] Royal Free London NHS Fdn Trust, Katharine Dormandy Haemophilia Ctr, Pond St, London NW3 2QG, England
[2] Royal Free London NHS Fdn Trust, Thrombosis Unit, Pond St, London NW3 2QG, England
[3] UCL, Dept Haematol, Inst Canc, London, England
[4] Univ Cambridge, Dept Haematol, Cambridge Biomed Campus, Cambridge, England
[5] NHS Blood & Transplant, Cambridge Biomed Campus, Cambridge, England
[6] Cambridge Univ Hosp, NIHR BioResource, Cambridge Biomed Campus, Cambridge, England
[7] Wellcome Trust Sanger Inst, Human Genet, Wellcome Trust Genome Campus, Cambridge, England
关键词
platelet; platelet genetic diseases; platelet structure; thrombocytopenia; platelet function; INHERITED THROMBOCYTOPENIA; WIDE ANALYSIS; RENAL DYSFUNCTION; GFI1B MUTATION; BONE-MARROW; GENE; PROTEIN; MEGAKARYOCYTES; BIOGENESIS; DEFECTS;
D O I
10.1111/bjh.14471
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Inherited disorders of platelet granules are clinically heterogeneous and their prevalence is underestimated because most patients do not undergo a complete diagnostic work-up. The lack of a genetic diagnosis limits the ability to tailor management, screen family members, aid with family planning, predict clinical progression and detect serious consequences, such as myelofibrosis, lung fibrosis and malignancy, in a timely manner. This is set to change with the introduction of high throughput sequencing (HTS) as a routine clinical diagnostic test. HTS diagnostic tests are now available, affordable and allow parallel screening of DNA samples for variants in all of the 80 known bleeding, thrombotic and platelet genes. Increased genetic diagnosis and curation of variants is, in turn, improving our understanding of the pathobiology and clinical course of inherited platelet disorders. Our understanding of the genetic causes of platelet granule disorders and the regulation of granule biogenesis is a work in progress and has been significantly enhanced by recent genomic discoveries from high-powered genome-wide association studies and genome sequencing projects. In the era of whole genome and epigenome sequencing, new strategies are required to integrate multiple sources of big data in the search for elusive, novel genes underlying granule disorders.
引用
收藏
页码:705 / 720
页数:16
相关论文
共 100 条
[1]   Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome [J].
Albers, Cornelis A. ;
Paul, Dirk S. ;
Schulze, Harald ;
Freson, Kathleen ;
Stephens, Jonathan C. ;
Smethurst, Peter A. ;
Jolley, Jennifer D. ;
Cvejic, Ana ;
Kostadima, Myrto ;
Bertone, Paul ;
Breuning, Martijn H. ;
Debili, Najet ;
Deloukas, Panos ;
Favier, Remi ;
Fiedler, Janine ;
Hobbs, Catherine M. ;
Huang, Ni ;
Hurles, Matthew E. ;
Kiddle, Graham ;
Krapels, Ingrid ;
Nurden, Paquita ;
Ruivenkamp, Claudia A. L. ;
Sambrook, Jennifer G. ;
Smith, Kenneth ;
Stemple, Derek L. ;
Strauss, Gabriele ;
Thys, Chantal ;
van Geet, Chris ;
Newbury-Ecob, Ruth ;
Ouwehand, Willem H. ;
Ghevaert, Cedric .
NATURE GENETICS, 2012, 44 (04) :435-U248
[2]   Exome sequencing identifies NBEAL2 as the causative gene for gray platelet syndrome [J].
Albers, Cornelis A. ;
Cvejic, Ana ;
Favier, Remi ;
Bouwmans, Evelien E. ;
Alessi, Marie-Christine ;
Bertone, Paul ;
Jordan, Gregory ;
Kettleborough, Ross N. W. ;
Kiddle, Graham ;
Kostadima, Myrto ;
Read, Randy J. ;
Sipos, Botond ;
Sivapalaratnam, Suthesh ;
Smethurst, Peter A. ;
Stephens, Jonathan ;
Voss, Katrin ;
Nurden, Alan ;
Rendon, Augusto ;
Nurden, Paquita ;
Ouwehand, Willem H. .
NATURE GENETICS, 2011, 43 (08) :735-737
[3]   A global reference for human genetic variation [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Wang, Jun ;
Wilson, Richard K. ;
Boerwinkle, Eric ;
Doddapaneni, Harsha ;
Han, Yi ;
Korchina, Viktoriya ;
Kovar, Christie ;
Lee, Sandra ;
Muzny, Donna ;
Reid, Jeffrey G. ;
Zhu, Yiming ;
Chang, Yuqi ;
Feng, Qiang ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Lan, Tianming ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Liu, Shengmao ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Tang, Meifang ;
Wang, Bo .
NATURE, 2015, 526 (7571) :68-+
[4]   Mechanism of platelet dense granule biogenesis: study of cargo transport and function of Rab32 and Rab38 in a model system [J].
Ambrosio, Andrea L. ;
Boyle, Judith A. ;
Di Pietro, Santiago M. .
BLOOD, 2012, 120 (19) :4072-4081
[5]   Design and application of a 23-gene panel by next-generation sequencing for inherited coagulation bleeding disorders [J].
Bastida, J. M. ;
del Rey, M. ;
Lozano, M. L. ;
Sarasquete, M. E. ;
Benito, R. ;
Fontecha, M. E. ;
Fisac, R. ;
Garcia-Frade, L. J. ;
Aguilar, C. ;
Martinez, M. P. ;
Pardal, E. ;
Aguilera, C. ;
Perez, B. ;
Ramos, R. ;
Cardesa, M. R. ;
Martin-Antoran, J. M. ;
Silvestre, L. A. ;
Cebeira, M. J. ;
Bermejo, N. ;
Riesco, S. ;
Mendoza, M. C. ;
Garcia-Sanz, R. ;
Gonzalez-Diaz, M. ;
Hernandez-Rivas, J. M. ;
Gonzalez-Porras, J. R. .
HAEMOPHILIA, 2016, 22 (04) :590-597
[6]   Genomic landscape of megakaryopoiesis and platelet function defects [J].
Bianchi, Elisa ;
Norfo, Ruggiero ;
Pennucci, Valentina ;
Zini, Roberta ;
Manfredini, Rossella .
BLOOD, 2016, 127 (10) :1249-1259
[7]   Thrombocytopenia-associated mutations in the ANKRD26 regulatory region induce MAPK hyperactivation [J].
Bluteau, Dominique ;
Balduini, Alessandra ;
Balayn, Nathalie ;
Currao, Manuela ;
Nurden, Paquita ;
Deswarte, Caroline ;
Leverger, Guy ;
Noris, Patrizia ;
Perrotta, Silverio ;
Solary, Eric ;
Vainchenker, William ;
Debili, Najet ;
Favier, Remi ;
Raslova, Hana .
JOURNAL OF CLINICAL INVESTIGATION, 2014, 124 (02) :580-591
[8]  
BRETONGORIUS J, 1981, AM J PATHOL, V102, P10
[9]   A concanavalin A-like lectin domain in the CHS1/LYST protein, shared by members of the BEACH family [J].
Burgess, Agathe ;
Mornon, Jean-Paul ;
de Saint-Basile, Genevieve ;
Callebaut, Isabelle .
BIOINFORMATICS, 2009, 25 (10) :1219-1222
[10]   SCAMP5, NBEA and AMISYN: three candidate genes for autism involved in secretion of large dense-core vesicles [J].
Castermans, Dries ;
Volders, Karolien ;
Crepel, An ;
Backx, Liesbeth ;
De Vos, Rita ;
Freson, Kathleen ;
Meulemans, Sandra ;
Vermeesch, Joris R. ;
Schrander-Stumpel, Connie T. R. M. ;
De Rijk, Peter ;
Del-Favero, Jurgen ;
Van Geet, Chris ;
Van De Ven, Wim J. M. ;
Steyaert, Jean G. ;
Devriendt, Koen ;
Creemers, John W. M. .
HUMAN MOLECULAR GENETICS, 2010, 19 (07) :1368-1378