Intrinsic Disorder Mediates Cooperative Signal Transduction in STIM1

被引:24
作者
Furukawa, Yukio [1 ]
Teraguchi, Shunsuke [2 ,3 ]
Ikegami, Takahisa [4 ]
Dagliyan, Onur [5 ]
Jin, Lin [6 ]
Hall, Damien [6 ,7 ]
Dokholyan, Nikolay V. [5 ]
Namba, Keiichi [1 ]
Akira, Shizuo [2 ]
Kurosaki, Tomohiro [8 ]
Baba, Yoshihiro [8 ]
Standley, Daron M. [6 ]
机构
[1] Osaka Univ, Grad Sch Frontier Biosci, Proton NanoMachine Grp, Nanobiol Labs, Osaka 5650871, Japan
[2] Osaka Univ, WPI Immunol Frontier Res Ctr, Host Def Lab, Osaka 5650871, Japan
[3] Osaka Univ, WPI Immunol Frontier Res Ctr, Quantitat Immunol Res Unit, Osaka 5650871, Japan
[4] Osaka Univ, Inst Prot Res, Lab Adv Prot Characterizat, Res Ctr State Of The Art Funct Prot Anal, Osaka 5650871, Japan
[5] Univ N Carolina, Dept Biochem & Biophys, Sch Med, Chapel Hill, NC 27599 USA
[6] Osaka Univ, WPI Immunol Frontier Res Ctr, Lab Syst Immunol, Osaka 5650871, Japan
[7] Australian Natl Univ, Sect Biophys Chem, Res Sch Chem, Acton, ACT 0200, Australia
[8] Osaka Univ, WPI Immunol Frontier Res Ctr, Lab Lymphocyte Differentiat, Osaka 5650871, Japan
关键词
DISCRETE MOLECULAR-DYNAMICS; OPERATED CALCIUM-ENTRY; T-CELL-ACTIVATION; EF-HAND; MECHANISTIC INSIGHTS; SECONDARY STRUCTURE; SENSORS STIM1; SAM DOMAIN; CA2+ ENTRY; PROTEINS;
D O I
10.1016/j.jmb.2014.03.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Intrinsically disordered domains have been reported to play important roles in signal transduction networks by introducing cooperativity into protein-protein interactions. Unlike intrinsically disordered domains that become ordered upon binding, the EF-SAM domain in the stromal interaction molecule (STIM) 1 is distinct in that it is ordered in the monomeric state and partially unfolded in its oligomeric state, with the population of the two states depending on the local Ca2+ concentration. The oligonnerization of STIM1, which triggers extracellular Ca2+ influx, exhibits cooperativity with respect to the local endoplasmic reticulum Ca2+ concentration. Although the physiological importance of the oligomerization reaction is well established, the mechanism of the observed cooperativity is not known. Here, we examine the response of the STIM1 EF-SAM domain to changes in Ca2+ concentration using mathematical modeling based on in vitro experiments. We find that the EF-SAM domain partially unfolds and dimerizes cooperatively with respect to Ca2+ concentration, with Hill coefficients and half-maximal activation concentrations very close to the values observed in vivo for STIM1 redistribution and extracellular Ca2+ influx. Our mathematical model of the dimerization reaction agrees quantitatively with our analytical ultracentrifugation-based measurements and previously published free energies of unfolding. A simple interpretation of these results is that Ca2+ loss effectively acts as a denaturant, enabling cooperative dimerization and robust signal transduction. We present a structural model of the Ca2+-unbound EF-SAM domain that is consistent with a wide range of evidence, including resistance to proteolytic cleavage of the putative dimerization portion. (C) 2014 The Authors. Published by Elsevier Ltd. This is an open access article under the CC BY-NC-ND license
引用
收藏
页码:2082 / 2097
页数:16
相关论文
共 43 条
[1]   Essential function for the calcium sensor STIM1 in mast cell activation and anaphylactic responses [J].
Baba, Yoshihiro ;
Nishida, Keigo ;
Fujii, Yoko ;
Hirano, Toshio ;
Hikida, Masaki ;
Kurosaki, Tomohiro .
NATURE IMMUNOLOGY, 2008, 9 (01) :81-88
[2]   STIM2 is a feedback regulator that stabilizes basal cytosolic and endoplasmic reticulum Ca2+ levels [J].
Brandman, Onn ;
Liou, Jen ;
Park, Wei Sun ;
Meyer, Tobias .
CELL, 2007, 131 (07) :1327-1339
[3]   Structural and Dynamic Determinants of Protein-Peptide Recognition [J].
Dagliyan, Onur ;
Proctor, Elizabeth A. ;
D'Auria, Kevin M. ;
Ding, Feng ;
Dokholyan, Nikolay V. .
STRUCTURE, 2011, 19 (12) :1837-1845
[4]   Ab initio folding of proteins with all-atom discrete molecular dynamics [J].
Ding, Feng ;
Tsao, Douglas ;
Nie, Huifen ;
Dokholyan, Nikolay V. .
STRUCTURE, 2008, 16 (07) :1010-1018
[5]   Discrete molecular dynamics studies of the folding of a protein-like model [J].
Dokholyan, NV ;
Buldyrev, SV ;
Stanley, HE ;
Shakhnovich, EI .
FOLDING & DESIGN, 1998, 3 (06) :577-587
[6]   Flexible nets - The roles of intrinsic disorder in protein interaction networks [J].
Dunker, AK ;
Cortese, MS ;
Romero, P ;
Iakoucheva, LM ;
Uversky, VN .
FEBS JOURNAL, 2005, 272 (20) :5129-5148
[7]   Intrinsically unstructured proteins and their functions [J].
Dyson, HJ ;
Wright, PE .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2005, 6 (03) :197-208
[8]   Modulation of allostery by protein intrinsic disorder [J].
Ferreon, Allan Chris M. ;
Ferreon, Josephine C. ;
Wright, Peter E. ;
Deniz, Ashok A. .
NATURE, 2013, 498 (7454) :390-+
[9]   Competing allosteric mechanisms modulate substrate binding in a dimeric enzyme [J].
Freiburger, Lee A. ;
Baettig, Oliver M. ;
Sprules, Tara ;
Berghuis, Albert M. ;
Auclair, Karine ;
Mittermaier, Anthony K. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2011, 18 (03) :288-U70
[10]   Similarities among receptor pockets and among compounds: Analysis and application to in silico ligand screening [J].
Fukunishi, Y ;
Mikami, Y ;
Nakamura, H .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2005, 24 (01) :34-45