Identification of Novel Glycolysis-Related Gene Signatures Associated With Prognosis of Patients With Clear Cell Renal Cell Carcinoma Based on TCGA

被引:14
作者
Wu, Chengjiang [1 ]
Cai, Xiaojie [2 ]
Yan, Jie [1 ]
Deng, Anyu [1 ]
Cao, Yun [1 ]
Zhu, Xueming [1 ]
机构
[1] Soochow Univ, Affiliated Hosp 2, Dept Clin Lab, Suzhou, Peoples R China
[2] Soochow Univ, Peoples Hosp Changshu City 1, Affiliated Changshu Hosp, Dept Radiol, Suzhou, Peoples R China
关键词
clear cell renal cell carcinoma; glycolysis-related gene; TCGA; prognosis; R programming language; CENTROMERE PROTEIN-A; METABOLIC REQUIREMENTS; AEROBIC GLYCOLYSIS; CANCER; EXPRESSION; CENPA;
D O I
10.3389/fgene.2020.589663
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Objective The purpose of the present study was to detect novel glycolysis-related gene signatures of prognostic values for patients with clear cell renal cell carcinoma (ccRCC). Methods Glycolysis-related gene sets were acquired from the Molecular Signatures Database (V7.0). Gene Set Enrichment Analysis (GSEA) software (4.0.3) was applied to analyze glycolysis-related gene sets. The Perl programming language (5.32.0) was used to extract glycolysis-related genes and clinical information of patients with ccRCC. The receiver operating characteristic curve (ROC) and Kaplan-Meier curve were drawn by the R programming language (3.6.3). Results The four glycolysis-related genes (B3GAT3, CENPA, AGL, and ALDH3A2) associated with prognosis were identified using Cox proportional regression analysis. A risk score staging system was established to predict the outcomes of patients with ccRCC. The patients with ccRCC were classified into the low-risk group and high-risk group. Conclusions We have successfully constructed a risk staging model for ccRCC. The model has a better performance in predicting the prognosis of patients, which may have positive reference value for the treatment and curative effect evaluation of ccRCC.
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页数:13
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