Whole-genome sequencing and antimicrobial resistance in Brucella melitensis from a Norwegian perspective

被引:43
|
作者
Johansen, Tone B. [1 ]
Scheffer, Lonneke [1 ,2 ,3 ]
Jensen, Veronica K. [1 ]
Bohlin, Jon [1 ]
Feruglio, Siri L. [1 ]
机构
[1] Norwegian Inst Publ Hlth, Div Infect Control & Environm Hlth, POB 4404, N-0403 Oslo, Norway
[2] Hanze Univ Appl Sci, Zernikepl 7, NL-9747 AS Groningen, Netherlands
[3] Univ Oslo, Dept Informat, POB 1072, N-0316 Oslo, Norway
来源
SCIENTIFIC REPORTS | 2018年 / 8卷
关键词
MULTIPLEX PCR ASSAY; RPOB GENE ANALYSIS; PHYLOGENETIC ANALYSIS; IDENTIFICATION; SUSCEPTIBILITY; RIFAMPICIN; THOUSANDS; LADDER; TIME;
D O I
10.1038/s41598-018-26906-3
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Brucellosis is a rarely encountered infection in Norway. The aim of this study was to explore all Brucella melitensis isolates collected in Norway from 1999 to 2016 in relation to origin of infection and antimicrobial resistance patterns. A total of 23 isolates were analysed by whole-genome sequencing and compared with selected sequences of B. melitensis available from NCBI. Additionally, SNP analysis in antibiotic resistance determining genes was performed. The majority belonged to the East Mediterranean Glade (genotype II), while the remaining isolates belonged to the African Glade (genotype III). These results indicate that human brucellosis in Norway is related to travels or migration from the Middle East, Asia or Africa, in accordance with results from Germany, Denmark and Sweden. Antibiotic susceptibility patterns were determined by broth microdilution method and/or gradient strip method. All isolates were susceptible for all tested antibiotics, except for rifampicin where phenotypical results indicated resistance or intermediate resistance in all isolates based on broth microdilution method, and in four isolates based on gradient strip testing. In contrast, screening of the rpoB gene did not reveal any mutations in the previously described rpoB "hot spot" regions related to rifampicin resistance, indicating overestimation of resistance based on phenotypical results.
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页数:9
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