Next-generation sequencing for mitochondrial disorders

被引:46
作者
Carroll, C. J. [1 ]
Brilhante, V. [1 ]
Suomalainen, A. [1 ]
机构
[1] Univ Helsinki, Res Programs Unit, Biomedicum Helsinki, Helsinki, Finland
基金
欧洲研究理事会; 芬兰科学院;
关键词
mitochondria; mitochondrial disease; next-generation sequencing; exome; diagnosis; TRANSFER-RNA SYNTHETASE; RESPIRATORY-CHAIN DISORDERS; COPY-NUMBER VARIATION; HOMOZYGOUS MUTATION; RECESSIVE MUTATIONS; OPTIC ATROPHY; EXOME CAPTURE; HEARING-LOSS; DNA; DISEASE;
D O I
10.1111/bph.12469
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
A great deal of our understanding of mitochondrial function has come from studies of inherited mitochondrial diseases, but still majority of the patients lack molecular diagnosis. Furthermore, effective treatments for mitochondrial disorders do not exist. Development of therapies has been complicated by the fact that the diseases are extremely heterogeneous, and collecting large enough cohorts of similarly affected individuals to assess new therapies properly has been difficult. Next-generation sequencing technologies have in the last few years been shown to be an effective method for the genetic diagnosis of inherited mitochondrial diseases. Here we review the strategies and findings from studies applying next-generation sequencing methods for the genetic diagnosis of mitochondrial disorders. Detailed knowledge of molecular causes also enables collection of homogenous cohorts of patients for therapy trials, and therefore boosts development of intervention. Linked ArticlesThis article is part of a themed issue on Mitochondrial Pharmacology: Energy, Injury & Beyond. To view the other articles in this issue visit
引用
收藏
页码:1837 / 1853
页数:17
相关论文
共 133 条
[1]   A method and server for predicting damaging missense mutations [J].
Adzhubei, Ivan A. ;
Schmidt, Steffen ;
Peshkin, Leonid ;
Ramensky, Vasily E. ;
Gerasimova, Anna ;
Bork, Peer ;
Kondrashov, Alexey S. ;
Sunyaev, Shamil R. .
NATURE METHODS, 2010, 7 (04) :248-249
[2]   An integrated map of genetic variation from 1,092 human genomes [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Schmidt, Jeanette P. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Dinh, Huyen ;
Kovar, Christie ;
Lee, Sandra ;
Lewis, Lora ;
Muzny, Donna ;
Reid, Jeff ;
Wang, Min ;
Wang, Jun ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Li, Zhuo ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Su, Zhe ;
Tai, Shuaishuai ;
Tang, Meifang .
NATURE, 2012, 491 (7422) :56-65
[3]   Low "penetrance" of phylogenetic knowledge in mitochondrial disease studies [J].
Bandelt, HJ ;
Achilli, A ;
Kong, QP ;
Salas, A ;
Lutz-Bonengel, S ;
Sun, C ;
Zhang, YP ;
Torroni, A ;
Yao, YG .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2005, 333 (01) :122-130
[4]   Extensive feature detection of N-terminal protein sorting signals [J].
Bannai, H ;
Tamada, Y ;
Maruyama, O ;
Nakai, K ;
Miyano, S .
BIOINFORMATICS, 2002, 18 (02) :298-305
[5]   Carrier Testing for Severe Childhood Recessive Diseases by Next-Generation Sequencing [J].
Bell, Callum J. ;
Dinwiddie, Darrell L. ;
Miller, Neil A. ;
Hateley, Shannon L. ;
Ganusova, Elena E. ;
Mudge, Joann ;
Langley, Ray J. ;
Zhang, Lu ;
Lee, Clarence C. ;
Schilkey, Faye D. ;
Sheth, Vrunda ;
Woodward, Jimmy E. ;
Peckham, Heather E. ;
Schroth, Gary P. ;
Kim, Ryan W. ;
Kingsmore, Stephen F. .
SCIENCE TRANSLATIONAL MEDICINE, 2011, 3 (65)
[6]   Early prenatal ventriculomegaly due to an AIFM1 mutation identified by linkage analysis and whole exome sequencing [J].
Berger, Itai ;
Ben-Neriah, Ziva ;
Dor-Wolman, Talia ;
Shaag, Avraham ;
Saada, Ann ;
Zenvirt, Shamir ;
Raas-Rothschild, Annick ;
Nadjari, Michel ;
Kaestner, Klaus H. ;
Elpeleg, Orly .
MOLECULAR GENETICS AND METABOLISM, 2011, 104 (04) :517-520
[7]   Diagnostic criteria for respiratory chain disorders in adults and children [J].
Bernier, FP ;
Boneh, A ;
Dennett, X ;
Chow, CW ;
Cleary, MA ;
Thorburn, DR .
NEUROLOGY, 2002, 59 (09) :1406-1411
[8]   Mutation of RRM2B, encoding p53-controlled ribonucleotide reductase (p53R2), causes severe mitochondrial DNA depletion [J].
Bourdon, Alice ;
Minai, Limor ;
Serre, Valerie ;
Jais, Jean-Philippe ;
Sarzi, Emmanuelle ;
Aubert, Sophie ;
Chretien, Dominique ;
de Lonlay, Pascale ;
Paquis-Flucklinger, Veronique ;
Arakawa, Hirofumi ;
Nakamura, Yusuke ;
Munnich, Arnold ;
Rotig, Agnes .
NATURE GENETICS, 2007, 39 (06) :776-780
[9]   MUTATION OF A NUCLEAR SUCCINATE-DEHYDROGENASE GENE RESULTS IN MITOCHONDRIAL RESPIRATORY-CHAIN DEFICIENCY [J].
BOURGERON, T ;
RUSTIN, P ;
CHRETIEN, D ;
BIRCHMACHIN, M ;
BOURGEOIS, M ;
VIEGASPEQUIGNOT, E ;
MUNNICH, A ;
ROTIG, A .
NATURE GENETICS, 1995, 11 (02) :144-149
[10]   Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays [J].
Brenner, S ;
Johnson, M ;
Bridgham, J ;
Golda, G ;
Lloyd, DH ;
Johnson, D ;
Luo, SJ ;
McCurdy, S ;
Foy, M ;
Ewan, M ;
Roth, R ;
George, D ;
Eletr, S ;
Albrecht, G ;
Vermaas, E ;
Williams, SR ;
Moon, K ;
Burcham, T ;
Pallas, M ;
DuBridge, RB ;
Kirchner, J ;
Fearon, K ;
Mao, J ;
Corcoran, K .
NATURE BIOTECHNOLOGY, 2000, 18 (06) :630-634