Modernising fish and shark growth curves with Bayesian length-at-age models

被引:50
作者
Smart, Jonathan J. [1 ,2 ]
Grammer, Gretchen L. [1 ,2 ]
机构
[1] SARDI Aquat Sci, West Beach, SA, Australia
[2] Univ Adelaide, Sch Biol Sci, Adelaide, SA, Australia
关键词
VALIDATED AGE; HELICOLENUS-PERCOIDES; MULTIMODEL INFERENCE; ISURUS-OXYRINCHUS; SHORTFIN MAKO; LIFE-HISTORY; VARIABILITY; PARAMETERS; FRAMEWORK; PERCH;
D O I
10.1371/journal.pone.0246734
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Growth modelling is a fundamental component of fisheries assessments but is often hindered by poor quality data from biased sampling. Several methods have attempted to account for sample bias in growth analyses. However, in many cases this bias is not overcome, especially when large individuals are under-sampled. In growth models, two key parameters have a direct biological interpretation: L-0, which should correspond to length-at-birth and L-infinity, which should approximate the average length of full-grown individuals. Here, we present an approach of fitting Bayesian growth models using Markov Chain Monte Carlo (MCMC), with informative priors on these parameters to improve the biological plausibility of growth estimates. A generalised framework is provided in an R package 'BayesGrowth', which removes the hurdle of programming an MCMC model for new users. Four case studies representing different sampling scenarios as well as three simulations with different selectivity functions were used to compare this Bayesian framework to standard frequentist growth models. The Bayesian models either outperformed or matched the results of frequentist growth models in all examples, demonstrating the broad benefits offered by this approach. This study highlights the impact that Bayesian models could provide in age and growth studies if applied more routinely rather than being limited to only complex or sophisticated applications.
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页数:21
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