Disease-Causing Mutations and Rearrangements in Long Non-coding RNA Gene Loci

被引:52
作者
Aznaourova, Marina [1 ]
Schmerer, Nils [1 ]
Schmeck, Bernd [1 ,2 ,3 ]
Schulte, Leon N. [1 ,2 ]
机构
[1] Philipps Univ Marburg, Inst Lung Res, Marburg, Germany
[2] Philipps Univ Marburg, German Ctr Lung Res DZL, Syst Biol Platform, Marburg, Germany
[3] Philipps Univ Marburg, Ctr Synthet Microbiol SYNMIKRO, Marburg, Germany
关键词
long non-coding RNA; genome-wide association study; variation (genetic); disease; single nucleotide polymorphism; mutation; GENOME-WIDE ASSOCIATION; CORONARY-ARTERY-DISEASE; GERM-LINE DELETION; BREAST-CANCER; UP-REGULATION; EMERGING ROLE; CELL-PROLIFERATION; CANDIDATE GENE; GROWTH ARREST; EXPRESSION;
D O I
10.3389/fgene.2020.527484
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The classic understanding of molecular disease-mechanisms is largely based on protein-centric models. During the past decade however, genetic studies have identified numerous disease-loci in the human genome that do not encode proteins. Such non-coding DNA variants increasingly gain attention in diagnostics and personalized medicine. Of particular interest are long non-coding RNA (lncRNA) genes, which generate transcripts longer than 200 nucleotides that are not translated into proteins. While most of the estimated similar to 20,000 lncRNAs currently remain of unknown function, a growing number of genetic studies link lncRNA gene aberrations with the development of human diseases, including diabetes, AIDS, inflammatory bowel disease, or cancer. This suggests that the protein-centric view of human diseases does not capture the full complexity of molecular patho-mechanisms, with important consequences for molecular diagnostics and therapy. This review illustrates well-documented lncRNA gene aberrations causatively linked to human diseases and discusses potential lessons for molecular disease models, diagnostics, and therapy.
引用
收藏
页数:22
相关论文
共 228 条
  • [21] Expression of Linear and Novel Circular Forms of an INK4/ARF-Associated Non-Coding RNA Correlates with Atherosclerosis Risk
    Burd, Christin E.
    Jeck, William R.
    Liu, Yan
    Sanoff, Hanna K.
    Wang, Zefeng
    Sharpless, Norman E.
    [J]. PLOS GENETICS, 2010, 6 (12) : 1 - 15
  • [22] Prader-Willi Syndrome - Clinical Genetics, Diagnosis and Treatment Approaches: An Update
    Butler, Merlin G.
    Miller, Jennifer L.
    Forster, Janice L.
    [J]. CURRENT PEDIATRIC REVIEWS, 2019, 15 (04) : 207 - 244
  • [23] A Long ncRNA Links Copy Number Variation to a Polycomb/Trithorax Epigenetic Switch in FSHD Muscular Dystrophy
    Cabianca, Daphne S.
    Casa, Valentina
    Bodega, Beatrice
    Xynos, Alexandros
    Ginelli, Enrico
    Tanaka, Yujiro
    Gabellini, Davide
    [J]. CELL, 2012, 149 (04) : 819 - 831
  • [24] Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    Cabili, Moran N.
    Trapnell, Cole
    Goff, Loyal
    Koziol, Magdalena
    Tazon-Vega, Barbara
    Regev, Aviv
    Rinn, John L.
    [J]. GENES & DEVELOPMENT, 2011, 25 (18) : 1915 - 1927
  • [25] Long Non-Coding RNAs as New Master Regulators of Resistance to Systemic Treatments in Breast Cancer
    Campos-Parra, Alma D.
    Lopez-Urrutia, Eduardo
    Orozco Moreno, Luz Tonantzin
    Lopez-Camarillo, Cesar
    Meza-Menchaca, Thuluz
    Gonzalez, Gabriela Figueroa
    Bustamante Montes, Lilia P.
    Perez-Plasencia, Carlos
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 19 (09)
  • [26] Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
    Carlevaro-Fita, Joana
    Lanzos, Andres
    Feuerbach, Lars
    Hong, Chen
    Mas-Ponte, David
    Pedersen, Jakob Skou
    Johnson, Rory
    Abascal, Federico
    Amin, Samirkumar B.
    Bader, Gary D.
    Barenboim, Jonathan
    Beroukhim, Rameen
    Bertl, Johanna
    Boroevich, Keith A.
    Brunak, Soren
    Campbell, Peter J.
    Carlevaro-Fita, Joana
    Chakravarty, Dimple
    Chan, Calvin Wing Yiu
    Chen, Ken
    Choi, Jung Kyoon
    Deu-Pons, Jordi
    Dhingra, Priyanka
    Diamanti, Klev
    Feuerbach, Lars
    Fink, J. Lynn
    Fonseca, Nuno A.
    Frigola, Joan
    Gambacorti-Passerini, Carlo
    Garsed, Dale W.
    Gerstein, Mark
    Getz, Gad
    Gonzalez-Perez, Abel
    Guo, Qianyun
    Gut, Ivo G.
    Haan, David
    Hamilton, Mark P.
    Haradhvala, Nicholas J.
    Harmanci, Arif O.
    Helmy, Mohamed
    Herrmann, Carl
    Hess, Julian M.
    Hobolth, Asger
    Hodzic, Ermin
    Hong, Chen
    Hornshoj, Henrik
    Isaev, Keren
    Izarzugaza, Jose M. G.
    Johnson, Todd A.
    Juul, Malene
    [J]. COMMUNICATIONS BIOLOGY, 2020, 3 (01)
  • [27] Global Positioning System: Understanding Long Noncoding RNAs through Subcellular Localization
    Carlevaro-Fita, Joana
    Johnson, Rory
    [J]. MOLECULAR CELL, 2019, 73 (05) : 869 - 883
  • [28] Disease-Associated SNPs in Inflammation-Related lncRNAs
    Castellanos-Rubio, Ainara
    Ghosh, Sankar
    [J]. FRONTIERS IN IMMUNOLOGY, 2019, 10
  • [29] A long noncoding RNA associated with susceptibility to celiac disease
    Castellanos-Rubio, Ainara
    Fernandez-Jimenez, Nora
    Kratchmarov, Radomir
    Luo, Xiaobing
    Bhagat, Govind
    Green, Peter H. R.
    Schneider, Robert
    Kiledjian, Megerditch
    Bilbao, Jose Ramon
    Ghosh, Sankar
    [J]. SCIENCE, 2016, 352 (6281) : 91 - 95
  • [30] Long non-coding RNAs in diseases related to inflammation and immunity
    Chen, Jiao
    Ao, Liangfei
    Yang, Jing
    [J]. ANNALS OF TRANSLATIONAL MEDICINE, 2019, 7 (18)