Disease-Causing Mutations and Rearrangements in Long Non-coding RNA Gene Loci

被引:53
作者
Aznaourova, Marina [1 ]
Schmerer, Nils [1 ]
Schmeck, Bernd [1 ,2 ,3 ]
Schulte, Leon N. [1 ,2 ]
机构
[1] Philipps Univ Marburg, Inst Lung Res, Marburg, Germany
[2] Philipps Univ Marburg, German Ctr Lung Res DZL, Syst Biol Platform, Marburg, Germany
[3] Philipps Univ Marburg, Ctr Synthet Microbiol SYNMIKRO, Marburg, Germany
关键词
long non-coding RNA; genome-wide association study; variation (genetic); disease; single nucleotide polymorphism; mutation; GENOME-WIDE ASSOCIATION; CORONARY-ARTERY-DISEASE; GERM-LINE DELETION; BREAST-CANCER; UP-REGULATION; EMERGING ROLE; CELL-PROLIFERATION; CANDIDATE GENE; GROWTH ARREST; EXPRESSION;
D O I
10.3389/fgene.2020.527484
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The classic understanding of molecular disease-mechanisms is largely based on protein-centric models. During the past decade however, genetic studies have identified numerous disease-loci in the human genome that do not encode proteins. Such non-coding DNA variants increasingly gain attention in diagnostics and personalized medicine. Of particular interest are long non-coding RNA (lncRNA) genes, which generate transcripts longer than 200 nucleotides that are not translated into proteins. While most of the estimated similar to 20,000 lncRNAs currently remain of unknown function, a growing number of genetic studies link lncRNA gene aberrations with the development of human diseases, including diabetes, AIDS, inflammatory bowel disease, or cancer. This suggests that the protein-centric view of human diseases does not capture the full complexity of molecular patho-mechanisms, with important consequences for molecular diagnostics and therapy. This review illustrates well-documented lncRNA gene aberrations causatively linked to human diseases and discusses potential lessons for molecular disease models, diagnostics, and therapy.
引用
收藏
页数:22
相关论文
共 228 条
[1]   Comprehensive Analysis of Long Non-Coding RNAs in Ovarian Cancer Reveals Global Patterns and Targeted DNA Amplification [J].
Akrami, Rozita ;
Jacobsen, Anders ;
Hoell, Jessica ;
Schultz, Nikolaus ;
Sander, Chris ;
Larsson, Erik .
PLOS ONE, 2013, 8 (11)
[2]   Beyond the RNA-dependent function of LncRNA genes [J].
Ali, Tamer ;
Grote, Phillip .
ELIFE, 2020, 9 :1-14
[3]  
An Haiyan, 2018, Noncoding RNA Res, V3, P243, DOI 10.1016/j.ncrna.2018.11.003
[4]   The novel lncRNA lnc-NR2F1 is proneurogenic and mutated in human neurodevelopmental disorders [J].
Ang, Cheen Euong ;
Ma, Qing ;
Wapinski, Orly L. ;
Fan, ShengHua ;
Flynn, Ryan A. ;
Lee, Qian Yi ;
Coe, Bradley ;
Onoguchi, Masahiro ;
Olmos, Victor Hipolito ;
Do, Brian T. ;
Dukes-Rimsky, Lynn ;
Xu, Jin ;
Tanabe, Koji ;
Wang, LiangJiang ;
Elling, Ulrich ;
Penninger, Josef M. ;
Zhao, Yang ;
Qu, Kun ;
Eichler, Evan E. ;
Srivastava, Anand ;
Wernig, Marius ;
Chang, Howard Y. .
ELIFE, 2019, 8
[5]   A Distinct Malignant Epithelioid Neoplasm With GLI1 Gene Rearrangements, Frequent S100 Protein Expression, and Metastatic Potential Expanding the Spectrum of Pathologic Entities With ACTB/MALAT1/PTCH1-GLI1 Fusions [J].
Antonescu, Cristina R. ;
Agaram, Narasimhan P. ;
Sung, Yun-Shao ;
Zhang, Lei ;
Swanson, David ;
Dickson, Brendan C. .
AMERICAN JOURNAL OF SURGICAL PATHOLOGY, 2018, 42 (04) :553-560
[6]   Causes of oncogenic chromosomal translocation [J].
Aplan, PD .
TRENDS IN GENETICS, 2006, 22 (01) :46-55
[7]  
Arriaga-Canon Cristian, 2018, Oncotarget, V9, P20872, DOI 10.18632/oncotarget.25038
[8]   Analysis of copy number alterations reveals the lncRNA ALAL-1 as a regulator of lung cancer immune evasion [J].
Athie, Alejandro ;
Marchese, Francesco P. ;
Gonzalez, Jovanna ;
Lozano, Teresa ;
Raimondi, Ivan ;
Juvvuna, Prasanna Kumar ;
Abad, Amaya ;
Marin-Bejar, Oskar ;
Serizay, Jacques ;
Martinez, Dannys ;
Ajona, Daniel ;
Pajares, Maria Jose ;
Sandoval, Juan ;
Montuenga, Luis M. ;
Kanduri, Chandrasekhar ;
Lasarte, Juan J. ;
Huarte, Maite .
JOURNAL OF CELL BIOLOGY, 2020, 219 (09)
[9]   Immunobiology of Long Noncoding RNAs [J].
Atianand, Maninjay K. ;
Caffrey, Daniel R. ;
Fitzgerald, Katherine A. .
ANNUAL REVIEW OF IMMUNOLOGY, VOL 35, 2017, 35 :177-198
[10]   Noncoding RNA MaIL1 is an integral component of the TLR4-TRIF pathway [J].
Aznaourova, Marina ;
Janga, Harshavardhan ;
Sefried, Stephanie ;
Kaufmann, Andreas ;
Dorna, Jens ;
Volkers, Sarah M. ;
Georg, Philipp ;
Lechner, Marcus ;
Hoppe, Judith ;
Doekel, Simon ;
Schmerer, Nils ;
Gruber, Achim D. ;
Linne, Uwe ;
Bauer, Stefan ;
Sander, Leif E. ;
Schmeck, Bernd ;
Schulte, Leon N. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (16) :9042-9053