Lessons from Structural Genomics

被引:82
|
作者
Terwilliger, Thomas C. [1 ]
Stuart, David [2 ]
Yokoyama, Shigeyuki [3 ]
机构
[1] Los Alamos Natl Lab, Los Alamos, NM 87545 USA
[2] Univ Oxford, Div Struct Biol, Wellcome Trust Ctr Human Genet, Oxford OX3 7BN, England
[3] RIKEN, Syst Struct Biol Ctr, Yokohama, Kanagawa 2300045, Japan
关键词
international cooperation; protein structure; X-ray crystallography; nuclear magnetic resonance; THERMOTOGA-MARITIMA; PROTEIN-PRODUCTION; CRYSTAL-STRUCTURE; DATA-COLLECTION; CRYSTALLIZATION; BIOINFORMATICS; STRATEGY; PROTOCOL; SYSTEM; IMPACT;
D O I
10.1146/annurev.biophys.050708.133740
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
A decade of structural genomics, the large-scale determination of protein structures, has generated a wealth of data and many important lessons for structural biology and for future large-scale projects. These lessons include a conformation that it is possible to construct large-scale facilities that can determine die structures of a hundred or more proteins per year, that these structures can be of high quality, and that these structures can have an important impact. Technology development has played a critical role in structural genomics, the difficulties at each step of determining a structure of a particular protein can be quantified, and validation of technologies is nearly as important as the technologies themselves. Finally, rapid deposition of data in public databases has increased the impact and usefulness of the data and international cooperation has advanced the field and improved data sharing.
引用
收藏
页码:371 / 383
页数:13
相关论文
共 50 条
  • [1] The challenge of protein structure determination - lessons from structural genomics
    Slabinski, Lukasz
    Jaroszewski, Lukasz
    Rodrigues, Ana P. C.
    Rychlewski, Leszek
    Wilson, Ian A.
    Lesley, Scott A.
    Godzik, Adam
    PROTEIN SCIENCE, 2007, 16 (11) : 2472 - 2482
  • [2] Microbial NAD Metabolism: Lessons from Comparative Genomics
    Gazzaniga, Francesca
    Stebbins, Rebecca
    Chang, Sheila Z.
    McPeek, Mark A.
    Brenner, Charles
    MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 2009, 73 (03) : 529 - +
  • [3] Structural genomics and drug discovery
    Lundstrom, K.
    JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2007, 11 (02) : 224 - 238
  • [4] Structural genomics for drug design against the pathogen Coxiella burnetii
    Franklin, Matthew C.
    Cheung, Jonah
    Rudolph, Michael J.
    Burshteyn, Fiana
    Cassidy, Michael
    Gary, Ebony
    Hillerich, Brandan
    Yao, Zhong-Ke
    Carlier, Paul R.
    Totrov, Maxim
    Love, James D.
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2015, 83 (12) : 2124 - 2136
  • [5] Structural genomics
    Lundstrom, Kenneth
    MOLECULAR BIOTECHNOLOGY, 2006, 34 (02) : 205 - 212
  • [6] Integrated database of information from structural genomics experiments
    Asada, Yukuhiko
    Sugahara, Michihiro
    Mizutani, Hisashi
    Naitow, Hisashi
    Tanaka, Tomoyuki
    Matsuura, Yoshinori
    Agari, Yoshihiro
    Ebihara, Akio
    Shinkai, Akeo
    Kuramitsu, Seiki
    Yokoyama, Shigeyuki
    Kaminuma, Eri
    Kobayashi, Norio
    Nishikata, Koro
    Shimoyama, Sayoko
    Toyoda, Tetsuro
    Ishikawa, Tetsuya
    Kunishima, Naoki
    ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2013, 69 : 914 - 919
  • [7] Postcards from the Edge: Structural Genomics of Archaeal Viruses
    Krupovic, Mart
    White, Malcolm F.
    Forterre, Patrick
    Prangishvili, David
    ADVANCES IN VIRUS RESEARCH, VOL 82: BACTERIOPHAGES, PT A, 2012, 82 : 33 - 62
  • [8] High-throughput crystallography for structural genomics
    Joachimiak, Andrzej
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2009, 19 (05) : 573 - 584
  • [9] The TB Structural Genomics Consortium: A decade of progress
    Chim, Nicholas
    Habel, Jeff E.
    Johnston, Jodie M.
    Krieger, Inna
    Miallau, Linda
    Sankaranarayanan, Ramasamy
    Morse, Robert P.
    Bruning, John
    Swanson, Stephanie
    Kim, Haelee
    Kim, Chang-Yub
    Li, Hongye
    Bulloch, Esther M.
    Payne, Richard J.
    Manos-Turvey, Alexandra
    Hung, Li-Wei
    Baker, Edward N.
    Lott, J. Shaun
    James, Michael N. G.
    Terwilliger, Thomas C.
    Eisenberg, David S.
    Sacchettini, James C.
    Goulding, Celia W.
    TUBERCULOSIS, 2011, 91 (02) : 155 - 172
  • [10] Structural Lessons From the Mutant Proinsulin Syndrome
    Dhayalan, Balamurugan
    Chatterjee, Deepak
    Chen, Yen-Shan
    Weiss, Michael A.
    FRONTIERS IN ENDOCRINOLOGY, 2021, 12