Co-C Dissociation of Adenosylcobalamin (Coenzyme B12): Role of Dispersion, Induction Effects, Solvent Polarity, and Relativistic and Thermal Corrections

被引:23
|
作者
Kepp, Kasper P. [1 ]
机构
[1] Tech Univ Denmark, DTU Chem, DK-2800 Lyngby, Denmark
来源
JOURNAL OF PHYSICAL CHEMISTRY A | 2014年 / 118卷 / 34期
关键词
DENSITY-FUNCTIONAL THEORY; RIBONUCLEOSIDE TRIPHOSPHATE REDUCTASE; GENERALIZED GRADIENT APPROXIMATION; CARBON BOND HOMOLYSIS; TRANS AXIAL LIGAND; SPIN-CROSSOVER; ELECTRONIC-STRUCTURE; ACTIVATION PARAMETERS; METHIONINE SYNTHASE; CHEMICAL-PROPERTIES;
D O I
10.1021/jp503607k
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Quantum-chemical cluster modeling is challenged in the limit of large, soft systems by the effects of dispersion and solvent, and well as other physical interactions. Adenosylcobalamin (AdoCbl, coenzyme B-12), as one of the most complex cofactors in life, constitutes such a challenge. The cleavage of its unique organometallic Co-C bond has inspired multiple studies of this cofactor. This paper reports the fully relaxed potential energy surface of Co-C cleavage of Ado Cbl, including for the first time all side-chain interactions with the dissociating Ado group. Various methods and corrections for dispersion, relativistic effects, solvent polarity, basis set superposition error, and thermal and vibrational effects were investigated, totaling more than SSO single-point energies for the large model. The results show immense variability depending on method, including solvation, functional type, and dispersion, challenging the conceived accuracy of methods used for such systems. In particular, B3LYP-D3 seems to severely underestimate the Co-C bond strength, consistent with previous results, and BP86 remains accurate for cobalamins when dispersion interactions are accounted for.
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页码:7104 / 7117
页数:14
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