Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry

被引:48
作者
Lau, Andy M. C. [1 ]
Ahdash, Zainab [1 ]
Martens, Chloe [1 ]
Politis, Argyris [1 ]
机构
[1] Kings Coll London, Dept Chem, London SE1 1DB, England
基金
英国惠康基金; 英国生物技术与生命科学研究理事会; 英国医学研究理事会;
关键词
D O I
10.1093/bioinformatics/btz022
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The Summary: Hydrogen deuterium exchange-mass spectrometry (HDX-MS) has emerged as a powerful technique for interrogating the conformational dynamics of proteins and their complexes. Currently, analysis of HDX-MS data remains a laborious procedure, mainly due to the lack of streamlined software to process the large datasets. We present Deuteros which is a standalone software designed to be coupled with Waters DynamX HDX data analysis software, allowing the rapid analysis and visualization of data from differential HDX-MS.
引用
收藏
页码:3171 / 3173
页数:3
相关论文
共 12 条
[1]   The Utility of Hydrogen/Deuterium Exchange Mass Spectrometry in Biopharmaceutical Comparability Studies [J].
Houde, Damian ;
Berkowitz, Steven A. ;
Engen, John R. .
JOURNAL OF PHARMACEUTICAL SCIENCES, 2011, 100 (06) :2071-2086
[2]  
Jensen P. F., 2016, Hydrogen Exchange Mass Spectrometry of Proteins: Fundamentals, Methods and Applications, P1, DOI DOI 10.1002/9781118703748.CH1
[3]   MSTools-Web based application for visualization and presentation of HXMS data [J].
Kavan, Daniel ;
Man, Petr .
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2011, 302 (1-3) :53-58
[4]   Hydrogen exchange mass spectrometry for studying protein structure and dynamics [J].
Konermann, Lars ;
Pan, Jingxi ;
Liu, Yu-Hong .
CHEMICAL SOCIETY REVIEWS, 2011, 40 (03) :1224-1234
[5]  
Lilkova E., 2015, The PyMOL Molecular Graphics System, Version 2.0
[6]   Hydrogen exchange mass spectrometry: what is it and what can it tell us? [J].
Marcsisin, Sean R. ;
Engen, John R. .
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2010, 397 (03) :967-972
[7]   Direct protein-lipid interactions shape the conformational landscape of secondary transporters [J].
Martens, Chloe ;
Shekhar, Mrinal ;
Borysik, Antoni J. ;
Lau, Andy M. ;
Reading, Eamonn ;
Tajkhorshid, Emad ;
Booth, Paula J. ;
Politis, Argyris .
NATURE COMMUNICATIONS, 2018, 9
[8]   An overview of hydrogen deuterium exchange mass spectrometry (HDX-MS) in drug discovery [J].
Masson, Glenn R. ;
Jenkins, Meredith L. ;
Burke, John E. .
EXPERT OPINION ON DRUG DISCOVERY, 2017, 12 (10) :981-994
[9]   Probing the Binding Interfaces of Protein Complexes Using Gas-Phase H/D Exchange Mass Spectrometry [J].
Mistarz, Ulrik H. ;
Brown, Jeffery M. ;
Haselmann, Kim F. ;
Rand, Kasper D. .
STRUCTURE, 2016, 24 (02) :310-318
[10]   Structural basis for substrate transport in the GLUT-homology family of monosaccharide transporters [J].
Quistgaard, Esben M. ;
Low, Christian ;
Moberg, Per ;
Tresaugues, Lionel ;
Nordlund, Par .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2013, 20 (06) :766-+