The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae)

被引：8

作者：

Liu, Fengqi ^{[1
,2
]}

Tembrock, Luke R. ^{[3
]}

Sun, Cheng ^{[4
]}

Han, Guiqing ^{[1
,2
]}

Guo, Changhong ^{[1
]}

Wu, Zhiqiang ^{[3
]}

机构：

[1] Harbin Normal Univ, Coll Life Sci & Technol, Key Lab Mol Cytogenet & Genet Breeding Heilongjia, Harbin, Peoples R China

[2] Heilongjiang Acad Agr Sci, Inst Pratacultural Sci, Harbin, Peoples R China

[3] Colorado State Univ, Dept Biol, Ft Collins, CO 80523 USA

[4] Chinese Acad Agr Sci, Inst Apicultural Res, Key Lab Pollinating Insect Biol, Minist Agr, Beijing, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2016年 / 1卷 / 01期

关键词：

Next generation sequencing; Oryza brachyantha; plastid genome; rice; PHYLOGENY;

D O I：

10.1080/23802359.2016.1155093

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The whole plastid genome of wild rice (Oryza brachyantha) is characterized in this study. The genome is 134 604 bp in length and is arranged in a typical circular structure, including a pair of inverted repeats (IRs) of 20 832 bp in size separated by a large single-copy region (LSC) of 80 411 bp in length and a small single-copy region (SSC) of 12 529 bp in length. The overall GC content of the genome is 38.98%. One hundred and ten unique genes were annotated from the chloroplast genome, including 76 protein-coding genes, 4 ribosomal RNA genes and 30 tRNA genes. A total of 20 of these genes are duplicated in the IR regions, 13 genes contain 1 intron and 2 genes (rps12 and ycf3) have 2 introns.

引用

页码：218 / 219

页数：2

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