The complete plastid genome of the wild rice species Oryza brachyantha (Poaceae)

被引：8

作者：

Liu, Fengqi ^{[1
,2
]}

Tembrock, Luke R. ^{[3
]}

Sun, Cheng ^{[4
]}

Han, Guiqing ^{[1
,2
]}

Guo, Changhong ^{[1
]}

Wu, Zhiqiang ^{[3
]}

机构：

[1] Harbin Normal Univ, Coll Life Sci & Technol, Key Lab Mol Cytogenet & Genet Breeding Heilongjia, Harbin, Peoples R China

[2] Heilongjiang Acad Agr Sci, Inst Pratacultural Sci, Harbin, Peoples R China

[3] Colorado State Univ, Dept Biol, Ft Collins, CO 80523 USA

[4] Chinese Acad Agr Sci, Inst Apicultural Res, Key Lab Pollinating Insect Biol, Minist Agr, Beijing, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2016年 / 1卷 / 01期

关键词：

Next generation sequencing; Oryza brachyantha; plastid genome; rice; PHYLOGENY;

D O I：

10.1080/23802359.2016.1155093

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The whole plastid genome of wild rice (Oryza brachyantha) is characterized in this study. The genome is 134 604 bp in length and is arranged in a typical circular structure, including a pair of inverted repeats (IRs) of 20 832 bp in size separated by a large single-copy region (LSC) of 80 411 bp in length and a small single-copy region (SSC) of 12 529 bp in length. The overall GC content of the genome is 38.98%. One hundred and ten unique genes were annotated from the chloroplast genome, including 76 protein-coding genes, 4 ribosomal RNA genes and 30 tRNA genes. A total of 20 of these genes are duplicated in the IR regions, 13 genes contain 1 intron and 2 genes (rps12 and ycf3) have 2 introns.

引用

页码：218 / 219

页数：2

共 50 条

[21] Enhancement of rice leaf photosynthesis by crossing between cultivated rice, Oryza sativa and wild rice species, Oryza ryfipogon
Masumoto, C
Ishii, T
Kataoka, S
Hatanaka, T
Uchida, N
PLANT PRODUCTION SCIENCE, 2004, 7 (03) : 252 - 259
[22] Complete plastid genome of Dendrobium naungmungense (Orchidaceae)
Wang, Min-Hua
Ma, Liang
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3423 - 3424
[23] The complete plastid genome of Camellia Octopetala (Theaceae)
Ye, Baojian
Tu, Xiongde
Liu, Dingkun
Chen, Shipin
Chen, Hui
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3014 - 3015
[24] The complete plastid genome ofFicus erecta(Moraceae)
Wang, Yanhong
Cui, Yanhong
MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 3353 - 3354
[25] Characterization of the complete plastid genome sequence of the endangered species Bretschneidera sinensis
Dong, Fengping
Liu, Xinhong
Zhang, Yanqin
Lu, Ruisen
Zheng, Zhixin
Shen, Xin
Li, Yingang
CONSERVATION GENETICS RESOURCES, 2019, 11 (03) : 287 - 290
[26] Characterization of the complete plastid genome sequence of the endangered species Bretschneidera sinensis
Fengping Dong
Xinhong Liu
Yanqin Zhang
Ruisen Lu
Zhixin Zheng
Xin Shen
Yingang Li
Conservation Genetics Resources, 2019, 11 : 287 - 290
[27] The Complete Plastid Genome of Magnolia zenii and Genetic Comparison to Magnoliaceae species
Li, Yongfu
Sylvester, Steven Paul
Li, Meng
Zhang, Cheng
Li, Xuan
Duan, Yifan
Wang, Xianrong
MOLECULES, 2019, 24 (02)
[28] Characterization of the complete plastid genome of a Chinese endemic species Carya kweichowensis
Ye, Linjiang
Fu, Chaonan
Wang, Yuehua
Liu, Jie
Gao, Lianming
MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02): : 492 - 493
[29] Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza
Yin, Hao
Akimoto, Masahiro
Kaewcheenchai, Reunreudee
Sotowa, Masahiro
Ishii, Takashige
Ishikawa, Ryuji
GENES & GENETIC SYSTEMS, 2015, 90 (05) : 269 - 281
[30] Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha
Ray, Soham
Bose, Lotan K.
Ray, Joshitha
Ngangkham, Umakanta
Katara, Jawahar L.
Samantaray, Sanghamitra
Behera, Lambodar
Anumalla, Mahender
Singh, Onkar N.
Chen, Meingsheng
Wing, Rod A.
Mohapatra, Trilochan
MOLECULAR GENETICS AND GENOMICS, 2016, 291 (04) : 1783 - 1794

← 1 2 3 4 5 →