Aquipluma nitroreducens gen. nov. sp. nov., a novel facultatively anaerobic bacterium isolated from a freshwater lake

被引:6
作者
Watanabe, Miho [1 ,2 ,3 ]
Kojima, Hisaya [1 ]
Fukui, Manabu [1 ]
机构
[1] Hokkaido Univ, Inst Low Temp Sci, Sapporo, Hokkaido, Japan
[2] Japan Soc Promot Sci, Chiyoda Ku, Tokyo 1028471, Japan
[3] Akita Prefectural Univ, Fac Bioresource Sci, Dept Environm Biol, Akita, Japan
关键词
Bacteroidetes; Prolixibacteraceae; facultative anaerobic bacterium; SEDIMINIS SP NOV; SEDIMENT; PROLIXIBACTERACEAE; CLASSIFICATION;
D O I
10.1099/ijsem.0.004551
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A novel facultatively anaerobic, nitrate-reducing bacterium, designated MeG22(T), was isolated from a freshwater lake in Japan. Cells of the strain were straight rods (0.8x2.5-10 mu m), motile, and Gram-stain-negative. For growth, the optimum NaCl concentration was 0% and the optimum temperature was 30 degrees C. Under anoxic conditions, strain MeG22(T) reduced nitrate to nitrite. Major cellular fatty acids were C-15:1 omega 6c (13.6 %), C-17:0 (11.9 %), anteiso-C-15:0 (10.6 %) and iso-C-15:0 (10.6 %). The major respiratory quinone was menaquinone-7. The genome sequence of strain MeG22(T) consists of 5 712 279 bp with a G+C content of 40.3mol%. Phylogenetic analysis based on the 16S rRNA gene revealed that the novel strain belonged to the family Prolixibacteraceae within the phylum Bacteroidetes. The closest relative of strain MeG22(T) was Sunxiuqinia faeciviva strain JAM-BA0302(T) with a 16S rRNA gene sequence similarity of 90.9 %. On the basis of phylogenetic and phenotypic characterization, Aquipluma nitroreducens, gen. nov., sp. nov., belonging to the family Prolixibacteraceae is proposed with the type strain MeG22(T) (=NBRC 112896(T)=DSM 106262(T)).
引用
收藏
页码:6408 / 6413
页数:6
相关论文
共 30 条
[1]   MAPLE 2.3.0: an improved system for evaluating the functionomes of genomes and metagenomes [J].
Arai, Wataru ;
Taniguchi, Takeaki ;
Goto, Susumu ;
Moriya, Yuki ;
Uehara, Hideya ;
Takemoto, Kazuhiro ;
Ogata, Hiroyuki ;
Takami, Hideto .
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 2018, 82 (09) :1515-1517
[2]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[3]  
BLIGH EG, 1959, CAN J BIOCHEM PHYS, V37, P911
[4]  
Chin KJ, 1999, APPL ENVIRON MICROB, V65, P5042
[5]   Draconibacterium sediminis sp nov., isolated from river sediment [J].
Du, Juan ;
Lai, Qiliang ;
Liu, Yang ;
Dong, Chunming ;
Xie, Yanrong ;
Shao, Zongze .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2015, 65 :2310-2314
[6]   Prolixibacter bellariivorans gen nov, sp nov, a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell [J].
Holmes, Dawn E. ;
Nevin, Kelly P. ;
Woodard, Trevor L. ;
Peacock, Aaron D. ;
Lovley, Derek R. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :701-707
[7]   Mangrovibacterium diazotrophicum gen. nov., sp nov., a nitrogen-fixing bacterium isolated from a mangrove sediment, and proposal of Prolixibacteraceae fam. nov. [J].
Huang, Xiao-Fang ;
Liu, Yu Juan ;
Dong, Jun-De ;
Qu, Ling-Yun ;
Zhang, Yan-Ying ;
Wang, Fa-Zuo ;
Tian, Xin-Peng ;
Zhang, Si .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :875-881
[8]   Prolhdbacter denitrificans sp nov., an iron-corroding, facultatively aerobic, nitrate-reducing bacterium isolated from crude oil, and emended descriptions of the genus Prolbobacter and Prolixibacter bellariivorans [J].
Iino, Takao ;
Sakamoto, Mitsuo ;
Ohkuma, Moriya .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2015, 65 :2865-2869
[9]   Description of Mariniphaga anaerophila gen. nov., sp nov., a facultatively aerobic marine bacterium isolated from tidal flat sediment, reclassification of the Draconibacteriaceae as a later heterotypic synonym of the Prolixibacteraceae and description of the family Marinifilaceae fam. nov. [J].
Iino, Takao ;
Mori, Koji ;
Itoh, Takashi ;
Kudo, Takuji ;
Suzuki, Ken-ichiro ;
Ohkumal, Moriya .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2014, 64 :3660-3667
[10]   MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms [J].
Kumar, Sudhir ;
Stecher, Glen ;
Li, Michael ;
Knyaz, Christina ;
Tamura, Koichiro .
MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (06) :1547-1549