Monitoring arsenic using genetically encoded biosensors in vitro: The role of evolved regulatory genes

被引:9
作者
Wang, Xuanyu [1 ,2 ,3 ]
Zhu, Kaili [1 ,2 ,3 ]
Chen, Dongdong [4 ]
Wang, Juan [1 ,2 ,3 ]
Wang, Xiaofei [5 ]
Xu, An [1 ,2 ,3 ]
Wu, Lijun [1 ,2 ,3 ]
Li, Luzhi [5 ]
Chen, Shaopeng [1 ,3 ]
机构
[1] Chinese Acad Sci, Hefei Inst Phys Sci, Key Lab High Magnet Field & Ion Beam Phys Biol, Hefei 230031, Anhui, Peoples R China
[2] Univ Sci & Technol China, Hefei 230026, Anhui, Peoples R China
[3] Key Lab Environm Toxicol & Pollut Control Technol, Hefei 230031, Anhui, Peoples R China
[4] Anhui Univ, Inst Phys Sci & Informat Technol, Hefei 230601, Anhui, Peoples R China
[5] Hefei Univ, Sch Biol Food & Environm, Hefei, Anhui, Peoples R China
基金
中国国家自然科学基金;
关键词
Toxic pollutant; Genetically encoded biosensors; In vitro; Evolved regulatory genes; Arsenic; FREE PROTEIN-SYNTHESIS; CELL-FREE BIOSENSOR; SYNTHETIC BIOLOGY; SYSTEM;
D O I
10.1016/j.ecoenv.2020.111273
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Toxic pollutant (TP) detection in situ using analytical instruments or whole-cell biosensors is inconvenient. Designing and developing genetically coded biosensors in vitro for real-world TP detection is a promising alternative. However, because the bioactivity and stability of some key biomolecules are weakened in vitro, the response and regulation of reporter protein become difficult. Here, we established a genetically encoded biosensor in vitro with an arsenical resistance operon repressor (ArsR) and GFP reporter gene. Given that the wildtype ArsR did not respond to arsenic and activate GFP expression in vitro, we found, after screening, an evolved ArsR mutant ep3 could respond to arsenic and exhibited an approximately 3.4-fold fluorescence in-crease. Arsenic induced expression of both wildtype ArsR and ep3 mutant in vitro, however, only ep3 mutant regulated the expression of reporter gene. Furthermore, the effects of cell extracts, temperature, pH, incubation, and equilibrium time were investigated, and the equilibration of reaction mixtures for 30 min at 37 degrees C was found to be essential for in vitro arsenic detection prior to treatment with arsenic. Based on our data, we established a standard procedure for arsenic detection in vitro. Our results will facilitate the practical application of genetically encoded biosensors in TP monitoring.
引用
收藏
页数:7
相关论文
共 33 条
[1]   Biosensors: Classifications, medical applications, and future prospective [J].
Alhadrami, Hani A. .
BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY, 2018, 65 (03) :497-508
[2]   Environmental Sensing of Heavy Metals Through Whole Cell Microbial Biosensors: A Synthetic Biology Approach [J].
Bereza-Malcolm, Lara Tess ;
Mann, Guelay ;
Franks, Ashley Edwin .
ACS SYNTHETIC BIOLOGY, 2015, 4 (05) :535-546
[3]   Cell-free protein synthesis: Applications come of age [J].
Carlson, Erik D. ;
Gan, Rui ;
Hodgman, C. Eric ;
Jewett, Michael C. .
BIOTECHNOLOGY ADVANCES, 2012, 30 (05) :1185-1194
[4]   High-Throughput Optimization Cycle of a Cell-Free Ribosome Assembly and Protein Synthesis System [J].
Caschera, Filippo ;
Karim, Ashty S. ;
Gazzola, Gianluca ;
d'Aquino, Anne E. ;
Packard, Norman H. ;
Jewett, Michael C. .
ACS SYNTHETIC BIOLOGY, 2018, 7 (12) :2481-2853
[5]   Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology [J].
Chappell, James ;
Jensen, Kirsten ;
Freemont, Paul S. .
NUCLEIC ACIDS RESEARCH, 2013, 41 (05) :3471-3481
[6]  
Chong Shaorong, 2014, Curr Protoc Mol Biol, V108, DOI 10.1002/0471142727.mb1630s108
[7]   Rapid and Scalable Preparation of Bacterial Lysates for Cell-Free Gene Expression [J].
Didovyk, Andriy ;
Tonooka, Taishi ;
Tsimring, Lev ;
Hasty, Jeff .
ACS SYNTHETIC BIOLOGY, 2017, 6 (12) :2198-2208
[8]   The All E-coli TX-TL Toolbox 2.0: A Platform for Cell-Free Synthetic Biology [J].
Garamella, Jonathan ;
Marshall, Ryan ;
Rustad, Mark ;
Noireaux, Vincent .
ACS SYNTHETIC BIOLOGY, 2016, 5 (04) :344-355
[9]   A Novel Fluorometric Bio-Sensing-Based Arsenic Detection System for Groundwater [J].
Gudlavalleti, Raja Hari ;
Bose, Subash Chandra ;
Verma, Sanjay Kumar ;
Khatri, Punit ;
Scaria, Joy ;
Dhewa, Shripal ;
Chaubey, Vinod Kumar .
IEEE SENSORS JOURNAL, 2017, 17 (17) :5391-5398
[10]   The Application of Whole Cell-Based Biosensors for Use in Environmental Analysis and in Medical Diagnostics [J].
Gui, Qingyuan ;
Lawson, Tom ;
Shan, Suyan ;
Yan, Lu ;
Liu, Yong .
SENSORS, 2017, 17 (07)