Advancements in plant proteomics using quantitative mass spectrometry

被引：48

作者：

Oeljeklaus, Silke ^{[1
]}

Meyer, Helmut E. ^{[1
]}

Warscheid, Bettina ^{[1
]}

机构：

[1] Ruhr Univ Bochum, Zentrum Klin Forsch, Med Prote Ctr, D-44780 Bochum, Germany

来源：

JOURNAL OF PROTEOMICS | 2009年 / 72卷 / 03期

关键词：

Plants; Functional proteomics; Protein quantification; Mass spectrometry; Phosphoproteome; Plant organelles; ION AFFINITY-CHROMATOGRAPHY; PLASMA-MEMBRANE PROTEINS; ARABIDOPSIS-THALIANA; PHOSPHORYLATED PEPTIDES; LIQUID-CHROMATOGRAPHY; LC-MS/MS; IN-VIVO; QUANTIFICATION; IDENTIFICATION; MIXTURES;

D O I：

10.1016/j.jprot.2008.11.008

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Due to innovative advancements in quantitative MS technologies, proteomics has evolved from taking mere "snapshots" of distinct proteomes in a defined state to monitoring, for instance, changes in abundance, location and/or posttranslational modification(s) of proteins under various conditions, thereby facilitating the functional characterization of proteins in large scale experiments. In plant biology, MS-based quantitative proteomics strategies utilizing stable isotope labeling or label-free methods for protein quantification have only recently been started to find increasing application to comparative and functional proteomics analyses. This review summarizes latest trends and applications in MS-based quantitative plant proteomics and provides insight into different technologies available. In addition, the studies presented here illustrate the enormous potential of quantitative MS for the analysis of important functional aspects with the emphasis on organellar and phosphoproteomics as well as dynamics and turnover of proteins in plants. (c) 2008 Elsevier B.V. All rights reserved.

引用

页码：545 / 554

页数：10

共 71 条

[1] Mass spectrometry-based proteomics [J].

Aebersold, R ;

Mann, M .

NATURE, 2003, 422 (6928) :198-207

[2] Comparative LC-MS: A landscape of peaks and valleys [J].

America, Antoine H. P. ;

Cordewener, Jan H. G. .

PROTEOMICS, 2008, 8 (04) :731-749

[3] Proteomic characterization of the human centrosome by protein correlation profiling [J].

Andersen, JS ;

Wilkinson, CJ ;

Mayor, T ;

Mortensen, P ;

Nigg, EA ;

Mann, M .

NATURE, 2003, 426 (6966) :570-574

[4] Nucleolar proteome dynamics [J].

Andersen, JS ;

Lam, YW ;

Leung, AKL ;

Ong, SE ;

Lyon, CE ;

Lamond, AI ;

Mann, M .

NATURE, 2005, 433 (7021) :77-83

[5] ISOLATION OF PHOSPHOPROTEINS BY IMMOBILIZED METAL (FE-3+) AFFINITY-CHROMATOGRAPHY [J].

ANDERSSON, L ;

PORATH, J .

ANALYTICAL BIOCHEMISTRY, 1986, 154 (01) :250-254

[6] A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen [J].

Asara, John M. ;

Christofk, Heather R. ;

Freimark, Lisa M. ;

Cantley, Lewis C. .

PROTEOMICS, 2008, 8 (05) :994-999

[7] Quantitative mass spectrometry in proteomics: a critical review [J].

Bantscheff, Marcus ;

Schirle, Markus ;

Sweetman, Gavain ;

Rick, Jens ;

Kuster, Bernhard .

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2007, 389 (04) :1017-1031

[8] Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis [J].

Benschop, Joris J. ;

Mohammed, Shabaz ;

O'Flaherty, Martina ;

Heck, Albert J. R. ;

Slijper, Monique ;

Menke, Frank L. H. .

MOLECULAR & CELLULAR PROTEOMICS, 2007, 6 (07) :1198-1214

[9] Metabolic labeling of proteins for proteomics [J].

Beynon, RJ ;

Pratt, JM .

MOLECULAR & CELLULAR PROTEOMICS, 2005, 4 (07) :857-872

[10] Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study [J].

Bindschedler, Laurence V. ;

Palmblad, Magnus ;

Cramer, Rainer .

PHYTOCHEMISTRY, 2008, 69 (10) :1962-1972

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