bNAber: database of broadly neutralizing HIV antibodies

被引:58
作者
Eroshkin, Alexey M. [1 ,2 ]
LeBlanc, Andrew [1 ,2 ]
Weekes, Dana [1 ,2 ]
Post, Kai [1 ,2 ]
Li, Zhanwen [2 ]
Rajput, Akhil [1 ,2 ]
Butera, Sal T. [1 ,3 ]
Burton, Dennis R. [1 ,3 ,4 ]
Godzik, Adam [1 ,2 ,5 ]
机构
[1] Scripps Res Inst, Ctr HIV AIDS Vaccine Immunol & Immunogen Discover, La Jolla, CA 92037 USA
[2] Sanford Burnham Med Res Inst, Bioinformat & Syst Biol Program, La Jolla, CA 92037 USA
[3] Scripps Res Inst, Dept Immunol & Microbiol, La Jolla, CA 92037 USA
[4] Ragon Inst MGH & Harvard, Cambridge, MA 02139 USA
[5] Univ Calif San Diego, Ctr Res Biol Syst, La Jolla, CA 92093 USA
基金
美国国家卫生研究院;
关键词
MONOCLONAL-ANTIBODIES; SEQUENCE; DESIGN;
D O I
10.1093/nar/gkt1083
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The discovery of broadly neutralizing antibodies (bNAbs) has provided an enormous impetus to the HIV vaccine research and to entire immunology. The bNAber database at http://bNAber.org provides open, user-friendly access to detailed data on the rapidly growing list of HIV bNAbs, including neutralization profiles, sequences and three-dimensional structures (when available). It also provides an extensive list of visualization and analysis tools, such as heatmaps to analyse neutralization data as well as structure and sequence viewers to correlate bNAbs properties with structural and sequence features of individual antibodies. The goal of the bNAber database is to enable researchers in this field to easily compare and analyse available information on bNAbs thereby supporting efforts to design an effective vaccine for HIV/AIDS. The bNAber database not only provides easy access to data that currently is scattered in the Supplementary Materials sections of individual papers, but also contributes to the development of general standards of data that have to be presented with the discovery of new bNAbs and a universal mechanism of how such data can be shared.
引用
收藏
页码:D1133 / D1139
页数:7
相关论文
共 22 条
[1]   Cross-neutralizing activity of human anti-V3 monoclonal antibodies derived from non-B clade HIV-1 infected individuals [J].
Andrabi, Raiees ;
Williams, Constance ;
Wang, Xiao-Hong ;
Li, Liuzhe ;
Choudhary, Alok K. ;
Wig, Naveet ;
Biswas, Ashutosh ;
Luthra, Kalpana ;
Nadas, Arthur ;
Seaman, Michael S. ;
Nyambi, Phillipe ;
Zolla-Pazner, Susan ;
Gorny, Miroslaw K. .
VIROLOGY, 2013, 439 (02) :81-88
[2]   Comprehensive cross-clade neutralization analysis of a panel of anti-human immunodeficiency virus type 1 monoclonal antibodies [J].
Binley, JA ;
Wrin, T ;
Korber, B ;
Zwick, MB ;
Wang, M ;
Chappey, C ;
Stiegler, G ;
Kunert, R ;
Zolla-Pazner, S ;
Katinger, H ;
Petropoulos, CJ ;
Burton, DR .
JOURNAL OF VIROLOGY, 2004, 78 (23) :13232-13252
[3]   A Blueprint for HIV Vaccine Discovery [J].
Burton, Dennis R. ;
Ahmed, Rafi ;
Barouch, Dan H. ;
Butera, Salvatore T. ;
Crotty, Shane ;
Godzik, Adam ;
Kaufmann, Daniel E. ;
McElrath, M. Juliana ;
Nussenzweig, Michel C. ;
Pulendran, Bali ;
Scanlan, Chris N. ;
Schief, William R. ;
Silvestri, Guido ;
Streeck, Hendrik ;
Walker, Bruce D. ;
Walker, Laura M. ;
Ward, Andrew B. ;
Wilson, Ian A. ;
Wyatt, Richard .
CELL HOST & MICROBE, 2012, 12 (04) :396-407
[4]   Residue-Level Prediction of HIV-1 Antibody Epitopes Based on Neutralization of Diverse Viral Strains [J].
Chuang, Gwo-Yu ;
Acharya, Priyamvada ;
Schmidt, Stephen D. ;
Yang, Yongping ;
Louder, Mark K. ;
Zhou, Tongqing ;
Do Kwon, Young ;
Pancera, Marie ;
Bailer, Robert T. ;
Doria-Rose, Nicole A. ;
Nussenzweig, Michel C. ;
Mascola, John R. ;
Kwong, Peter D. ;
Georgiev, Ivelin S. .
JOURNAL OF VIROLOGY, 2013, 87 (18) :10047-10058
[5]  
Cohen J, 2013, SCIENCE, V341, P1168, DOI 10.1126/science.341.6151.1171
[6]   Restricting HIV-1 pathways for escape using rationally designed anti-HIV-1 antibodies [J].
Diskin, Ron ;
Klein, Florian ;
Horwitz, Joshua A. ;
Halper-Stromberg, Ariel ;
Sather, D. Noah ;
Marcovecchio, Paola M. ;
Lee, Terri ;
West, Anthony P., Jr. ;
Gao, Han ;
Seaman, Michael S. ;
Stamatatos, Leonidas ;
Nussenzweig, Michel C. ;
Bjorkman, Pamela J. .
JOURNAL OF EXPERIMENTAL MEDICINE, 2013, 210 (06) :1235-1249
[7]   Increasing the Potency and Breadth of an HIV Antibody by Using Structure-Based Rational Design [J].
Diskin, Ron ;
Scheid, Johannes F. ;
Marcovecchio, Paola M. ;
West, Anthony P., Jr. ;
Klein, Florian ;
Gao, Han ;
Gnanapragasam, Priyanthi N. P. ;
Abadir, Alexander ;
Seaman, Michael S. ;
Nussenzweig, Michel C. ;
Bjorkman, Pamela J. .
SCIENCE, 2011, 334 (6060) :1289-1293
[8]   Delineating Antibody Recognition in Polyclonal Sera from Patterns of HIV-1 Isolate Neutralization [J].
Georgiev, Ivelin S. ;
Doria-Rose, Nicole A. ;
Zhou, Tongqing ;
Do Kwon, Young ;
Staupe, Ryan P. ;
Moquin, Stephanie ;
Chuang, Gwo-Yu ;
Louder, Mark K. ;
Schmidt, Stephen D. ;
Altae-Tran, Han R. ;
Bailer, Robert T. ;
McKee, Krisha ;
Nason, Martha ;
O'Dell, Sijy ;
Ofek, Gilad ;
Pancera, Marie ;
Srivatsan, Sanjay ;
Shapiro, Lawrence ;
Connors, Mark ;
Migueles, Stephen A. ;
Morris, Lynn ;
Nishimura, Yoshiaki ;
Martin, Malcolm A. ;
Mascola, John R. ;
Kwong, Peter D. .
SCIENCE, 2013, 340 (6133) :751-756
[9]   Biomolecules in the computer -: Jmol to the rescue [J].
Herraez, Angel .
BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION, 2006, 34 (04) :255-261
[10]   Broad and potent neutralization of HIV-1 by a gp41-specific human antibody [J].
Huang, Jinghe ;
Ofek, Gilad ;
Laub, Leo ;
Louder, Mark K. ;
Doria-Rose, Nicole A. ;
Longo, Nancy S. ;
Imamichi, Hiromi ;
Bailer, Robert T. ;
Chakrabarti, Bimal ;
Sharma, Shailendra K. ;
Alam, S. Munir ;
Wang, Tao ;
Yang, Yongping ;
Zhang, Baoshan ;
Migueles, Stephen A. ;
Wyatt, Richard ;
Haynes, Barton F. ;
Kwong, Peter D. ;
Mascola, John R. ;
Connors, Mark .
NATURE, 2012, 491 (7424) :406-+