Donghicola mangrovi sp. nov., a member of the family Rhodobacteraceae isolated from mangrove forest in Thailand

被引:1
作者
Charoenyingcharoen, Piyanat [1 ]
Kim, Ji-Sun [2 ]
Theeragool, Gunjana [3 ]
Lee, Keun-Chul [2 ]
Yukphan, Pattaraporn [1 ]
Lee, Jung-Sook [2 ,4 ]
机构
[1] Natl Ctr Genet Engn & Biotechnol BIOTEC, Thailand Bioresource Res Ctr TBRC, Microbial Divers & Utilizat Res Team, Pathum Thani 12120, Thailand
[2] Korea Res Inst Biosci & Biotechnol, Korean Collect Type Cultures, 181 Ipsin Gil, Jeongeup Si 56212, Jeollabuk Do, South Korea
[3] Kasetsart Univ, Dept Microbiol, Fac Sci, Bangkok 10900, Thailand
[4] Korea Univ Sci & Technol UST, 217 Gajeong Ro, Daejeon 305350, South Korea
关键词
Donghicola mangrovi sp. nov; mangrove forest; Thailand; DEOXYRIBONUCLEIC-ACID; BACTERIUM; EXTRACTION; SEQUENCES; SEAWATER; DATABASE;
D O I
10.1099/ijsem.0.004570
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two novel Gram-stain-negative, rod-shaped and non-motile bacterial strains, designated B5-SW-15(T) and C2-DW-16, were isolated from water collected in mangrove forests in Ranong Province, Thailand. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strains B5-SW-15(T) and C2-DW-16 belonged to the genus Donghicola and were most closely related to Donghicola tyrosinivorans DSM 100212(T) (98.2 and 98.1%, respectively) and Donghicola eburneus DSM 29127(T) (97.7 and 97.6%, respectively). The average nucleotide identity and digital DNA-DNA hybridization values between strain B5-SW-15(T), strain C2-DW-16 and related species were 95.8 and 71.6% (to strain C2-DW-16), 76.8 and 21.3% (to D. tyrosinivorans DSM 100212(T)) and 80.3 and 24.2 % (to D. eburneus DSM 29127(T)), respectively. The predominant cellular fatty acids (>5 %) were summed feature 8 (C-18:1 omega 6c and/or C-18:1 omega 7c), C-16:0 and C-12:1 3-OH. Ubiquinone Q-10 was the sole respiratory quinone. DNA G+C contents of the isolates were 61.0 and 61.2 mol% based on whole genome sequences. Strains B5-SW-15(T) and C2-DW-16 contained aminolipid, phosphatidylcholine, phosphatidylethanolamine and phosphatidylglycerol as the major polar lipids. On the basis of the results from phenotypic, chemotaxonomic and phylogenetic analyses, strains B5-SW-15(T) and C2-DW-16 constitute a novel species of the genus Donghicola in the family Rhodobacteraceae for which the name Donghicola mangrovi sp. nov. is proposed. The type strain is B5-SW-15(T) (=BCC 56522(T)=TBRC 9562(T)=KCTC 72743(T)).
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页码:1 / 7
页数:7
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