A molecular dynamics simulation study of buckyballs in water:: Atomistic versus coarse-grained models of C60

被引:37
作者
Choudhury, Niharendu [1 ]
机构
[1] Bhabha Atom Res Ctr, Theoret Chem Sect, Bombay 4000085, Maharashtra, India
关键词
D O I
10.1063/1.2217442
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A simple coarse-grained water-C-60 model potential is proposed to study the solvation behavior of C-60 in water. Extensive molecular dynamics simulations are performed to compare the hydration behavior of the coarse-grained C-60 with that of its atomistic counterpart. In the coarse-grained description, we model the C-60 as a spherical solute and its interaction with water is represented by a simple two-body central potential as obtained from a coarse graining of the interactions of a water molecule with all the atoms of the C-60. On the other hand, the atomistic model takes into account a discrete nature of all the atoms of C-60 explicitly. Molecular dynamics simulations are carried out in an isothermal-isobaric ensemble at normal temperature and pressure. Various spatial and orientational correlations of the water around the two model C(60)s are compared. The coarse-grained model is shown to reproduce the hydration behavior of the C-60 quite well. The simplicity and the computational economy of the coarse-grained model will allow for simulations of self-assembly processes of a much larger system over a longer period of time. (c) 2006 American Institute of Physics.
引用
收藏
页数:7
相关论文
共 65 条
[41]   THE STRUCTURE OF LIQUID WATER AT AN EXTENDED HYDROPHOBIC SURFACE [J].
LEE, CY ;
MCCAMMON, JA ;
ROSSKY, PJ .
JOURNAL OF CHEMICAL PHYSICS, 1984, 80 (09) :4448-4455
[42]   A COMPARISON OF THE STRUCTURE AND DYNAMICS OF LIQUID WATER AT HYDROPHOBIC AND HYDROPHILIC SURFACES - A MOLECULAR-DYNAMICS SIMULATION STUDY [J].
LEE, SH ;
ROSSKY, PJ .
JOURNAL OF CHEMICAL PHYSICS, 1994, 100 (04) :3334-3345
[43]   A molecular-dynamics simulation study of solvent-induced repulsion between C60 fullerenes in water -: art. no. 204504 [J].
Li, LW ;
Bedrov, D ;
Smith, GD .
JOURNAL OF CHEMICAL PHYSICS, 2005, 123 (20)
[44]   Repulsive solvent-induced interaction between C60 fullerenes in water -: art. no. 011502 [J].
Li, LW ;
Bedrov, D ;
Smith, GD .
PHYSICAL REVIEW E, 2005, 71 (01)
[45]   Hydrophobicity at small and large length scales [J].
Lum, K ;
Chandler, D ;
Weeks, JD .
JOURNAL OF PHYSICAL CHEMISTRY B, 1999, 103 (22) :4570-4577
[46]   Design and synthesis of novel [60]fullerene derivatives as potential HIV aspartic protease inhibitors [J].
Marcorin, GL ;
Da Ros, T ;
Castellano, S ;
Stefancich, G ;
Bonin, I ;
Miertus, S ;
Prato, M .
ORGANIC LETTERS, 2000, 2 (25) :3955-3958
[47]   Bulk properties of C76 and C84 fullerites studied by MD simulation based on a central two body intermolecular potential [J].
Micali, F ;
Abramo, MC ;
Caccamo, C .
JOURNAL OF PHYSICS AND CHEMISTRY OF SOLIDS, 2003, 64 (02) :319-324
[48]   Temperature dependence of three-body hydrophobic interactions: Potential of mean force, enthalpy, entropy, heat capacity, and nonadditivity [J].
Moghaddam, MS ;
Shimizu, S ;
Chan, HS .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (01) :303-316
[49]   Molecular dynamics analysis of a buckyball-antibody complex [J].
Noon, WH ;
Kong, YF ;
Ma, JP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 :6466-6470
[50]   A MOLECULAR-DYNAMICS METHOD FOR SIMULATIONS IN THE CANONICAL ENSEMBLE [J].
NOSE, S .
MOLECULAR PHYSICS, 1984, 52 (02) :255-268