Identification of Ferroptosis-Related Genes in Schizophrenia Based on Bioinformatic Analysis

被引:14
|
作者
Feng, Shunkang [1 ,2 ]
Chen, Jun [3 ,4 ,5 ,6 ]
Qu, Chunhui [2 ]
Yang, Lu [3 ,4 ]
Wu, Xiaohui [3 ,4 ]
Wang, Shuo [3 ,4 ]
Yang, Tao [3 ,4 ]
Liu, Hongmei [3 ,4 ]
Fang, Yiru [3 ,4 ,5 ,6 ]
Sun, Ping [2 ,3 ,4 ]
机构
[1] Qingdao Univ, Med Coll, Qingdao 266071, Peoples R China
[2] Qingdao Mental Hlth Ctr, Qingdao 266034, Peoples R China
[3] Shanghai Jiao Tong Univ, Clin Res Ctr, Sch Med, Shanghai 200030, Peoples R China
[4] Shanghai Jiao Tong Univ, Shanghai Mental Hlth Ctr, Div Mood Disorders, Sch Med, Shanghai 200030, Peoples R China
[5] CAS Ctr Excellence Brain Sci & Intelligence Techno, Shanghai 200031, Peoples R China
[6] Shanghai Key Lab Psychot Disorders, Shanghai 201108, Peoples R China
关键词
ferroptosis; schizophrenia; GEO; bioinformatic; EXPRESSION; TP53;
D O I
10.3390/genes13112168
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The purpose of this study is to explore the correlation between ferroptosis-related genes and schizophrenia in order to explore the new direction of diagnosis and treatment of schizophrenia. We screened the datasets related to schizophrenia from the Gene Expression Comprehensive Database (GEO) and obtained ferroptosis-related genes from the FerrDB database. Bioinformatics methods were used to analyze differentially expressed genes (DEGs) and genes associated with ferroptosis-related between schizophrenia patients and healthy controls. On this basis, the hub genes were finally screened by enrichment analysis and PPI interaction analysis. Hub genes associated with ferroptosis were validated using other schizophrenia datasets in the GEO database. Finally, the hub gene-microRNA (miRNA), gene-transcription factor interaction network was constructed, and three ferroptosis-related hub genes (TP53, VEGFA and PTGS2) were screened. The validation results of these three genes in other datasets also support this conclusion. A miRNA: hsa-mir-16-5p was found to be related to the three hub genes, and pPHF8, SAP30 and lKDM5B were identified as common regulators of the three hub genes. Our results indicate that TP53, VEGFA and PTGS2 are significantly associated with schizophrenia, and may be ferroptosis-related markers of the disease.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] IDENTIFICATION OF FERROPTOSIS-RELATED GENES IN CAROTID ATHEROSCLEROSIS ON BIOINFORMATIC ANALYSIS
    Cai, Qiujing
    JOURNAL OF HYPERTENSION, 2023, 41 : E86 - E86
  • [2] Identification of Ferroptosis-Related Genes in Alzheimer's Disease Based on Bioinformatic Analysis
    Wang, Ying
    Chen, Guohua
    Shao, Wei
    FRONTIERS IN NEUROSCIENCE, 2022, 16
  • [3] Identification of ferroptosis-related genes in acute phase of temporal lobe epilepsy based on bioinformatic analysis
    Shihao Chen
    Xing Jin
    Tao He
    Mulan Zhang
    Huiqin Xu
    BMC Genomics, 24
  • [4] Identification of ferroptosis-related genes in acute phase of temporal lobe epilepsy based on bioinformatic analysis
    Chen, Shihao
    Jin, Xing
    He, Tao
    Zhang, Mulan
    Xu, Huiqin
    BMC GENOMICS, 2023, 24 (01)
  • [5] Identification and Correlation Analysis of Ferroptosis-Related Genes in Three Brain Regions of Patients with Schizophrenia
    Dai, Shiqin
    Xu, Yong
    Yang, Tingting
    Wang, Feng
    Jiang, Yihua
    ACTAS ESPANOLAS DE PSIQUIATRIA, 2024, 52 (06): : 800 - 809
  • [6] Analysis and identification of ferroptosis-related genes in ulcerative colitis
    Chen, Chen
    Lan, Bo
    Xie, Guanghong
    Liu, Zhaoyang
    SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY, 2023, 58 (12) : 1422 - 1433
  • [7] Screening of ferroptosis-related genes with prognostic effect in colorectal cancer by bioinformatic analysis
    Hu, Dongzhi
    Zhou, Zhengyang
    Wang, Junyi
    Zhu, Kegan
    FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 9
  • [8] Ferroptosis-related biomarkers for Alzheimer's disease: Identification by bioinformatic analysis in hippocampus
    Wang, Binyang
    Fu, Chenyang
    Wei, Yuanyuan
    Xu, Bonan
    Yang, Rongxing
    Li, Chuanxiong
    Qiu, Meihua
    Yin, Yong
    Qin, Dongdong
    FRONTIERS IN CELLULAR NEUROSCIENCE, 2022, 16
  • [9] Role of ferroptosis-related genes in Stanford type a aortic dissection and identification of key genes: new insights from bioinformatic analysis
    Zou, Hua-Xi
    Qiu, Bai-Quan
    Lai, Song-Qing
    Huang, Huang
    Zhou, Xue-Liang
    Gong, Cheng-Wu
    Wang, Li-Jun
    Yuan, Ming-Ming
    He, An-Di
    Liu, Ji-Chun
    BIOENGINEERED, 2021, 12 (02) : 9976 - 9990
  • [10] Identification of ferroptosis-related genes in the progress of NASH
    He, Linwei
    Wang, Jianming
    Tao, Baihua
    Zhu, Ruolan
    Li, Changbing
    Ning, Bo
    FRONTIERS IN ENDOCRINOLOGY, 2023, 14