Improvement of the comparative map of chicken chromosome 13

被引：19

作者：

Buitenhuis, AJ ^{[1
]}

Crooijmans, RPMA ^{[1
]}

van Coppenraet, ESB ^{[1
]}

Veenendaal, A ^{[1
]}

Groenen, MAM ^{[1
]}

van der Poel, JJ ^{[1
]}

机构：

[1] Wageningen Univ, Inst Anim Sci, Anim Breeding & Genet Grp, NL-6700 AH Wageningen, Netherlands

来源：

ANIMAL GENETICS | 2002年 / 33卷 / 04期

关键词：

chicken; comparative mapping; single nucleotide polymorphism;

D O I：

10.1046/j.1365-2052.2002.00861.x

中图分类号：

S8 [畜牧、动物医学、狩猎、蚕、蜂];

学科分类号：

0905 ;

摘要：

A comparative map was made of chicken chromosome 13 (GGA13) with a part of human chromosome 5 (HSA5). Microsatellite markers specific for GGA13 were used to screen the Wageningen chicken bacterial artificial chromosome (BAC) library. Selected BAC clones were end sequenced and 57 sequence tag site (STS) markers were designed for contig building. In total, 204 BAC clones were identified which resulted in a coverage of about 20% of GGA13. Identification of genes was performed by a bi-directional approach. The first approach starting with sequencing mapped chicken BAC subclones, where sequences were used to identify orthologous genes in human and mouse by a basic local alignment search tool (BLAST) database search. The second approach started with the identification of chicken orthologues of human genes in the HSA5q23-35 region. The chicken orthologous genes were subsequently mapped by fluorescent in situ hybridisation (FISH) and/or single neucleotide polymorphism typing. The total number of genes mapped on GGA13 is increased from 14 to a total of 20 genes. Genes mapped on GGA13 have their orthologues on HSA5q23-5q35 in human and on Mmu11, Mmu13 and Mmu18 in mouse.

引用

页码：249 / 254

页数：6

共 17 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].

Altschul, SF ;

Madden, TL ;

Schaffer, AA ;

Zhang, JH ;

Zhang, Z ;

Miller, W ;

Lipman, DJ .

NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402

[2] An ordered comparative map of the cattle and human genomes [J].

Band, MR ;

Larson, JH ;

Rebeiz, M ;

Green, CA ;

Heyen, DW ;

Donovan, J ;

Windish, R ;

Steining, C ;

Mahyuddin, P ;

Womack, JE ;

Lewin, HA .

GENOME RESEARCH, 2000, 10 (09) :1359-1368

[3] A new DNA sequence assembly program [J].

Bonfield, JK ;

Smith, KF ;

Staden, R .

NUCLEIC ACIDS RESEARCH, 1995, 23 (24) :4992-4999

[4] The dynamics of chromosome evolution in birds and mammals [J].

Burt, DW ;

Bruley, C ;

Dunn, IC ;

Jones, CT ;

Ramage, A ;

Law, AS ;

Morrice, DR ;

Paton, IR ;

Smith, J ;

Windsor, D ;

Sazanov, A ;

Fries, R ;

Waddington, D .

NATURE, 1999, 402 (6760) :411-413

[5] HSA4 and GGA4: Remarkable conservation despite 300-Myr divergence [J].

Chowdhary, BP ;

Raudsepp, T .

GENOMICS, 2000, 64 (01) :102-105

[6] CHARACTERIZATION OF A RED JUNGLE FOWL BY WHITE LEGHORN BACKCROSS REFERENCE POPULATION FOR MOLECULAR MAPPING OF THE CHICKEN GENOME [J].

CRITTENDEN, LB ;

PROVENCHER, L ;

SANTANGELO, L ;

LEVIN, I ;

ABPLANALP, H ;

BRILES, RW ;

BRILES, WE ;

DODGSON, JB .

POULTRY SCIENCE, 1993, 72 (02) :334-348

[7] The gene orders on human chromosome 15 and chicken chromosome 10 reveal multiple inter- and intrachromosomal rearrangements [J].

Crooijmans, RPMA ;

Dijkhof, RJM ;

Veenendaal, T ;

van der Poel, JJ ;

Nicholls, RD ;

Bovenhuis, H ;

Groenen, MAM .

MOLECULAR BIOLOGY AND EVOLUTION, 2001, 18 (11) :2102-2109

[8] Two-dimensional screening of the Wageningen chicken BAC library [J].

Crooijmans, RPMA ;

Vrebalov, J ;

Dijkhof, RJM ;

van der Poel, JJ ;

Groenen, MAM .

MAMMALIAN GENOME, 2000, 11 (05) :360-363

[9] A gene map of the rat derived from linkage analysis and related regions in the mouse and human genomes [J].

Gauguier, D ;

Kaisaki, PJ ;

Rouard, M ;

Wallis, RH ;

Browne, J ;

Rapp, JP ;

Bihoreau, MT .

MAMMALIAN GENOME, 1999, 10 (07) :675-686

[10]

Groenen MAM, 2000, GENOME RES, V10, P137

← 1 2 →