Trade-off between Processivity and Hydrolytic Velocity of Cellobiohydrolases at the Surface of Crystalline Cellulose

被引:75
作者
Nakamura, Akihiko [1 ]
Watanabe, Hiroki [2 ]
Ishida, Takuya [1 ,3 ]
Uchihashi, Takayuki [2 ,4 ,5 ]
Wada, Masahisa [1 ,6 ]
Ando, Toshio [2 ,4 ,5 ]
Igarashi, Kiyohiko [1 ,3 ]
Samejima, Masahiro [1 ]
机构
[1] Univ Tokyo, Grad Sch Agr & Life Sci, Dept Biomat Sci, Bunkyo Ku, Tokyo 1138657, Japan
[2] Kanazawa Univ, Dept Phys, Kanazawa, Ishikawa 9201192, Japan
[3] Japan Sci & Technol Agcy, Adv Low Carbon Technol Res & Dev Program, Chiyoda Ku, Tokyo 1020076, Japan
[4] Kanazawa Univ, Coll Sci & Engn, BioAFM Frontier Res Ctr, Kanazawa, Ishikawa 9201192, Japan
[5] Japan Sci & Technol Agcy, Core Res Evolut Sci & Technol, Chiyoda Ku, Tokyo 1020075, Japan
[6] Kyung Hee Univ, Coll Life Sci, Dept Plant & Environm New Resources, Yongin 446701, Gyeonggi Do, South Korea
基金
日本学术振兴会; 日本科学技术振兴机构;
关键词
TRICHODERMA-REESEI CELLOBIOHYDROLASE; PHANEROCHAETE-CHRYSOSPORIUM; GENE-EXPRESSION; X-RAY; DEGRADATION; ENZYME; EFFICIENT; BINDING; TRANSCRIPTOME; ORGANIZATION;
D O I
10.1021/ja4119994
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Analysis of heterogeneous catalysis at an interface is difficult because of the variety of reaction sites and the difficulty of observing the reaction. Enzymatic hydrolysis of cellulose by cellulases is a typical heterogeneous reaction at a solid/liquid interface, and a key parameter of such reactions on polymeric substrates is the processivity, i.e., the number of catalytic cycles that can occur without detachment of the enzyme from the substrate. In this study, we evaluated the reactions of three closely related glycoside hydrolase family 7 cellobiohydrolases from filamentous fungi at the molecular level by means of high-speed atomic force microscopy to investigate the structure-function relationship of the cellobiohydrolases on crystalline cellulose. We found that high moving velocity of enzyme molecules on the surface is associated with a high dissociation rate constant from the substrate, which means weak interaction between enzyme and substrate. Moreover, higher values of processivity were associated with more loop regions covering the subsite cleft, which may imply higher binding affinity. Loop regions covering the subsites result in stronger interaction, which decreases the velocity but increases the processivity. These results indicate that there is a trade-off between processivity and hydrolytic velocity among processive cellulases.
引用
收藏
页码:4584 / 4592
页数:9
相关论文
共 42 条
[31]   The first genome-level transcriptome of the wood-degrading fungus Phanerochaete chrysosporium grown on red oak [J].
Sato, Shin ;
Feltus, F. Alex ;
Iyer, Prashanti ;
Tien, Ming .
CURRENT GENETICS, 2009, 55 (03) :273-286
[32]   THE IDENTIFICATION, MOLECULAR-CLONING AND CHARACTERIZATION OF A GENE FROM PHANEROCHAETE-CHRYSOSPORIUM THAT SHOWS STRONG HOMOLOGY TO THE EXO-CELLOBIOHYDROLASE-I GENE FROM TRICHODERMA-REESEI [J].
SIMS, P ;
JAMES, C ;
BRODA, P .
GENE, 1988, 74 (02) :411-422
[33]   Crystalline cellulose degradation: New insight into the function of cellobiohydrolases [J].
Teeri, TT .
TRENDS IN BIOTECHNOLOGY, 1997, 15 (05) :160-167
[34]   Trichoderma reesei cellobiohydrolases:: why so efficient on crystalline cellulose? [J].
Teeri, TT ;
Koivula, A ;
Linder, M ;
Wohlfahrt, G ;
Divne, C ;
Jones, TA .
BIOCHEMICAL SOCIETY TRANSACTIONS, 1998, 26 (02) :173-178
[35]   ENZYME-PRODUCTION BY RECOMBINANT TRICHODERMA-REESEI STRAINS [J].
UUSITALO, JM ;
NEVALAINEN, KMH ;
HARKKI, AM ;
KNOWLES, JKC ;
PENTTILA, ME .
JOURNAL OF BIOTECHNOLOGY, 1991, 17 (01) :35-49
[36]   THE 1,4-BETA-D-GLUCAN CELLOBIOHYDROLASES FROM PHANEROCHAETE-CHRYSOSPORIUM .1. A SYSTEM OF SYNERGISTICALLY ACTING ENZYMES HOMOLOGOUS TO TRICHODERMA-REESEI [J].
UZCATEGUI, E ;
RUIZ, A ;
MONTESINO, R ;
JOHANSSON, G ;
PETTERSSON, G .
JOURNAL OF BIOTECHNOLOGY, 1991, 19 (2-3) :271-285
[37]  
Vallim MA, 1998, APPL ENVIRON MICROB, V64, P1924
[38]   Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins [J].
Vanden Wymelenberg, Amber ;
Minges, Patrick ;
Sabat, Grzegorz ;
Martinez, Diego ;
Aerts, Andrea ;
Salamov, Asaf ;
Grigoriev, Igor ;
Shapiro, Harris ;
Putnam, Nik ;
Belinky, Paula ;
Dosoretz, Carlos ;
Gaskell, Jill ;
Kersten, Phil ;
Cullen, Dan .
FUNGAL GENETICS AND BIOLOGY, 2006, 43 (05) :343-356
[39]   Transcriptome and Secretome Analyses of Phanerochaete chrysosporium Reveal Complex Patterns of Gene Expression [J].
Vanden Wymelenberg, Amber ;
Gaskell, Jill ;
Mozuch, Mike ;
Kersten, Phil ;
Sabat, Grzegorz ;
Martinez, Diego ;
Cullen, Dan .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2009, 75 (12) :4058-4068
[40]   Engineering the exo-loop of Trichoderma reesei cellobiohydrolase, Ce17A.: A comparison with Phanerochaete chrysosporium Cel7D [J].
von Ossowski, I ;
Ståhlberg, J ;
Koivula, A ;
Piens, K ;
Becker, D ;
Boer, H ;
Harle, R ;
Harris, M ;
Divne, C ;
Mahdi, S ;
Zhao, YX ;
Driguez, H ;
Claeyssens, M ;
Sinnott, ML ;
Teeri, TT .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 333 (04) :817-829