Atomic simulations of protein folding, using the replica exchange algorithm

被引：0
|
作者：
Nymeyer, H [1 ]
Gnanakaran, S [1 ]
García, AE [1 ]
机构：
[1] Los Alamos Natl Lab, Theoret Biol & Biophys Grp, Los Alamos, NM 87545 USA
来源：
NUMERICAL COMPUTER METHODS, PT D | 2004年 / 383卷
关键词：
D O I：
暂无
中图分类号：
O29 [应用数学];
学科分类号：
070104 ;
摘要：
引用
收藏
页码：119 / +
页数：32
相关论文
共 50 条
  • [41] COMP 223-Protein folding using replica exchange and mechanism-based conformational searching
    Shell, M. Scott
    Ozkan, Banu
    Voelz, Vincent
    Wu, Albert
    Dill, Ken A.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2008, 235
  • [42] Replica exchange simulations of transient encounter complexes in protein-protein association
    Kim, Young C.
    Tang, Chun
    Clore, G. Marius
    Hummer, Gerhard
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (35) : 12855 - 12860
  • [43] A global optimization scheme: Kernel replica exchange simulation method for protein folding
    Mu, Yuguang
    Yang, Ye
    Xu, Weixin
    JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY, 2008, 7 (02): : 177 - 187
  • [44] Kinetic network model: A tool for exploring the efficiency of replica exchange for protein folding
    Zheng, Weihua
    BIOPHYSICAL JOURNAL, 2007, : 151A - 151A
  • [45] Multiplexed-replica exchange molecular dynamics method for protein folding simulation
    Rhee, YM
    Pande, VS
    BIOPHYSICAL JOURNAL, 2003, 84 (02) : 775 - 786
  • [46] Sampling of Protein Folding Transitions: Multicanonical Versus Replica Exchange Molecular Dynamics
    Jiang, Ping
    Yasar, Fatih
    Hansmann, Ulrich H. E.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2013, 9 (08) : 3816 - 3825
  • [47] Exploring protein folding free energy landscape: Replica exchange Monte Carlo
    Zhou, RH
    MONTE CARLO METHOD IN THE PHYSICAL SCIENCES, 2003, 690 : 406 - 407
  • [48] Replica Exchange Wang-Landau Simulation of Lattice Protein Folding Funnels
    Shi, Guangjie
    Wust, Thomas
    Landau, David P.
    28TH ANNUAL IUPAP CONFERENCE ON COMPUTATIONAL PHYSICS (CCP2016), 2017, 905
  • [49] Refinement Of Protein Model Structures In Explicit Solvent Using Biasing Potential Replica Exchange Simulations
    Kannan, Srinivasaraghavan
    Zacharias, Martin
    BIOPHYSICAL JOURNAL, 2009, 96 (03) : 653A - 653A
  • [50] Understanding the folding and stability of a zinc finger-based full sequence design protein with replica exchange molecular dynamics simulations
    Li, Wenfei
    Zhang, Jian
    Wang, Wei
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2007, 67 (02) : 338 - 349
12345