A COPULA-MODEL BASED SEMIPARAMETRIC INTERACTION TEST UNDER THE CASE-CONTROL DESIGN

被引:2
作者
Zhang, Hong [1 ]
Qin, Jing [2 ]
Landi, Maria [3 ]
Caporaso, Neil [3 ]
Yu, Kai [4 ]
机构
[1] Fudan Univ, Sch Life Sci, Inst Biostat, Shanghai 200433, Peoples R China
[2] NIAID, Biostat Res Branch, NIH MSC 7630, Bethesda, MD 20892 USA
[3] NCI, Div Canc Epidemiol & Genet, NIH MSC 9769, Bethesda, MD 20892 USA
[4] NCI, Div Canc Epidemiol & Genet, NIH MSC 9780, Bethesda, MD 20892 USA
基金
美国国家卫生研究院;
关键词
Case-only design; gene-environment interaction; gene-gene interaction; pseudo likelihood; MAXIMUM-LIKELIHOOD-ESTIMATION; GENE-ENVIRONMENT INDEPENDENCE; LUNG-CANCER; SUSCEPTIBILITY LOCUS; REGRESSION-MODELS; ASSOCIATION; DEPENDENCE; VARIANTS; 5P15.33; DISEASE;
D O I
10.5705/ss.2012.013s
中图分类号
O21 [概率论与数理统计]; C8 [统计学];
学科分类号
020208 ; 070103 ; 0714 ;
摘要
It is important to study the interaction between risk factors in molecular epidemiology studies. To improve the power for the detection of interaction, some statistical testing procedures have been proposed in the literature by incorporating certain assumptions on the underlying joint distribution of two risk factors. For example, the well known case-only test used in genetic epidemiology studies is derived under the assumption of independence between the two risk factors. However, such testing procedures could have detrimental effects on both false positive and false negative rates when assumptions are not met. We propose a parametric copula function to model the joint distribution while leaving the marginal distributions for the two risk factors unspecified. A unified approach is proposed to estimate/test the interaction effect. This approach is very flexible and can be applied to study the interaction between risk factors that are continuous or discrete. A simulation study finds that the proposed test is generally more powerful than the traditional robust test derived under the standard logistic regression, and without specifying the relationship between the two risk factors. The performance of the proposed approach is comparable with the case-only test when the two risk factors are indeed independent in the control population. Unlike the case-only test, the proposed test can still maintain the type I error rate when the independence assumption is not valid. The application of the proposed procedure is demonstrated through two cancer epidemiology studies.
引用
收藏
页码:1505 / 1521
页数:17
相关论文
共 27 条
[1]   Serum vitamin D concentration and prostate cancer risk: A nested case-control study [J].
Ahn, Jiyoung ;
Peters, Ulrike ;
Albanes, Demetrius ;
Purdue, Mark P. ;
Abnet, Christian C. ;
Chatterjee, Nilanjan ;
Horst, Ronald L. ;
Hollis, Bruce W. ;
Huang, Wen-Yi ;
Shikany, James M. ;
Hayes, Richard B. .
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE, 2008, 100 (11) :796-804
[2]   Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1 [J].
Amos, Christopher I. ;
Wu, Xifeng ;
Broderick, Peter ;
Gorlov, Ivan P. ;
Gu, Jian ;
Eisen, Timothy ;
Dong, Qiong ;
Zhang, Qing ;
Gu, Xiangjun ;
Vijayakrishnan, Jayaram ;
Sullivan, Kate ;
Matakidou, Athena ;
Wang, Yufei ;
Mills, Gordon ;
Doheny, Kimberly ;
Tsai, Ya-Yu ;
Chen, Wei Vivien ;
Shete, Sanjay ;
Spitz, Margaret R. ;
Houlston, Richard S. .
NATURE GENETICS, 2008, 40 (05) :616-622
[3]  
[Anonymous], 1991, Statistical Models in S
[4]   Serniparametric maximum likelihood estimation exploiting gene-environment independence in case-control studies [J].
Chatterjee, N ;
Carroll, RJ .
BIOMETRIKA, 2005, 92 (02) :399-418
[5]  
Cochran W.G., 2007, Sampling techniques
[6]  
Cornfield J., 1956, P 3 BERKELEY S MATH, VIV, P135
[7]   Copula-based regression models for a bivariate mixed discrete and continuous outcome [J].
de Leon, A. R. ;
Wu, B. .
STATISTICS IN MEDICINE, 2011, 30 (02) :175-185
[8]  
GENEST C, 1995, BIOMETRIKA, V82, P543, DOI 10.2307/2337532
[9]   PSEUDO MAXIMUM-LIKELIHOOD ESTIMATION - THEORY AND APPLICATIONS [J].
GONG, G ;
SAMANIEGO, FJ .
ANNALS OF STATISTICS, 1981, 9 (04) :861-869
[10]   A susceptibility locus for lung cancer maps to nicotinic acetylcholine receptor subunit genes on 15q25 [J].
Hung, Rayjean J. ;
Mckay, James D. ;
Gaborieau, Valerie ;
Boffetta, Paolo ;
Hashibe, Mia ;
Zaridze, David ;
Mukeria, Anush ;
Szeszenia-Dabrowska, Neonilia ;
Lissowska, Jolanta ;
Rudnai, Peter ;
Fabianova, Eleonora ;
Mates, Dana ;
Bencko, Vladimir ;
Foretova, Lenka ;
Janout, Vladimir ;
Chen, Chu ;
Goodman, Gary ;
Field, John K. ;
Liloglou, Triantafillos ;
Xinarianos, George ;
Cassidy, Adrian ;
McLaughlin, John ;
Liu, Geoffrey ;
Narod, Steven ;
Krokan, Hans E. ;
Skorpen, Frank ;
Elvestad, Maiken Bratt ;
Hveem, Kristian ;
Vatten, Lars ;
Linseisen, Jakob ;
Clavel-Chapelon, Francoise ;
Vineis, Paolo ;
Bueno-de-Mesquita, H. Bas ;
Lund, Eiliv ;
Martinez, Carmen ;
Bingham, Sheila ;
Rasmuson, Torgny ;
Hainaut, Pierre ;
Riboli, Elio ;
Ahrens, Wolfgang ;
Benhamou, Simone ;
Lagiou, Pagona ;
Trichopoulos, Dimitrios ;
Holcatova, Ivana ;
Merletti, Franco ;
Kjaerheim, Kristina ;
Agudo, Antonio ;
Macfarlane, Gary ;
Talamini, Renato ;
Simonato, Lorenzo .
NATURE, 2008, 452 (7187) :633-637