Characterization of the complete mitochondrial genome of tea tussock moth, Euproctis pseudoconspersa (Lepidoptera: Lymantriidae) and its phylogenetic implications

被引:24
作者
Dong, Wan-Wei [1 ]
Dong, Si-Yu [1 ]
Jiang, Guo-Fang [1 ]
Huang, Guo-Hua [2 ]
机构
[1] Nanjing Normal Univ, Coll Life Sci, Jiangsu Key Lab Biodivers & Biotechnol, Nanjing 210023, Jiangsu, Peoples R China
[2] Hunan Agr Univ, Hunan Prov Key Lab Biol & Control Plant Dis & Ins, Changsha 410128, Hunan, Peoples R China
基金
中国国家自然科学基金;
关键词
Mitochondrial genome; Euproctis pseudoconspersa; Noctuoidea; Phylogenetic relationship; COMPLETE NUCLEOTIDE-SEQUENCE; CNAPHALOCROCIS-MEDINALIS; LEVEL CLASSIFICATION; COMPLETE MITOGENOME; SILKWORM MOTH; NOCTUOIDEA; EVOLUTION; COMPILATION; GEOMETRIDAE; INSECTA;
D O I
10.1016/j.gene.2015.11.020
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In present work, we described the mitochondrial genome (mitogenome) of the tea tussock moth Euproctis pseudoconspersa (Lepidoptera: Lymantriidae). The complete mitogenome of E. pseudoconspersa is a circular genome 15,461 bp in size. It contains 37 genes and an A + T-rich region usually presented in lepidopteran mitogenomes, which genes share a lot of features with other known lepidopteran mitogenomes. Nucleotide composition of A + Tin this mitogenome is 79.92%, and the AT skew is slightly positive. Both codon distribution and relative synonymous codon usage of the 13 protein-coding genes (PCGs) are consistent with those published lepidopteran sequences. All tRNA genes have typical cloverleaf secondary structures, except for the tRNA(Ser(AGN)), in which the dihydrouridine (DHU) arm is simplified down to a loop. The A + T-rich region of E. pseudoconspersa mitogenome possess the motif 'ATAGA' and poly-T stretch as the formerly identified conserved elements of Lepidoptera mitogenomes. The phylogenetic relationships were reconstructed by using maximum likelihood (ML) and Bayesian inference (BI) methods based on nucleotide sequences of 13 PCGs of 38 moths. The results were very consistent with the traditional relationships within Noctuoidea from morphological data, and showed that Lymantriidae is more closely related to Erebidae than to Noctuidae. (c) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:37 / 46
页数:10
相关论文
共 68 条
[1]  
[Anonymous], MITOCHONDRIAL DNA
[2]  
Ayres DL, 2012, SYST BIOL, V61, P170, DOI [10.1093/sysbio/syr100, 10.1093/sysbio/sys029]
[3]  
Burland T G, 2000, Methods Mol Biol, V132, P71
[4]   The complete mitochondrial genome of the tobacco hornworm, Manduca sexta, (Insecta: Lepidoptera: Sphingidae), and an examination of mitochondrial gene variability within butterflies and moths [J].
Cameron, Stephen L. ;
Whiting, Michael F. .
GENE, 2008, 408 (1-2) :112-123
[5]   How to sequence and annotate insect mitochondrial genomes for systematic and comparative genomics research [J].
Cameron, Stephen L. .
SYSTEMATIC ENTOMOLOGY, 2014, 39 (03) :400-411
[6]   Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny [J].
Cameron, Stephen L. .
ANNUAL REVIEW OF ENTOMOLOGY, VOL 59, 2014, 2014, 59 :95-117
[7]   The Comparative RNA Web (CRW) Site:: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs:: Correction (vol 3, pg 2, 2002) -: art. no. 15 [J].
Cannone, JJ ;
Subramanian, S ;
Schnare, MN ;
Collett, JR ;
D'Souza, LM ;
Du, YS ;
Feng, B ;
Lin, N ;
Madabusi, LV ;
Müller, KM ;
Pande, N ;
Shang, ZD ;
Yu, N ;
Gutell, RR .
BMC BIOINFORMATICS, 2002, 3 (1)
[8]   The complete mitochondrial genomes of two ghost moths, Thitarodes renzhiensis and Thitarodes yunnanensis: the ancestral gene arrangement in Lepidoptera [J].
Cao, Yong-Qiang ;
Ma, Chuan ;
Chen, Ji-Yue ;
Yang, Da-Rong .
BMC GENOMICS, 2012, 13
[9]   Characterization of the Complete Mitochondrial Genomes of Cnaphalocrocis medinalis and Chilo suppressalis (Lepidoptera: Pyralidae) [J].
Chai, Huan-Na ;
Du, Yu-Zhou ;
Zhai, Bao-Ping .
INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES, 2012, 8 (04) :561-579
[10]   MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].
Edgar, RC .
NUCLEIC ACIDS RESEARCH, 2004, 32 (05) :1792-1797