Time-correlated single molecule localization microscopy enhances resolution and fidelity

被引:3
作者
Hermon, Kobi [1 ]
Schidorsky, Shachar [1 ]
Razvag, Yair [1 ]
Yakovian, Oren [1 ]
Sherman, Eilon [1 ]
机构
[1] Hebrew Univ Jerusalem, Racah Inst Phys, IL-91904 Jerusalem, Israel
关键词
IMAGEJ PLUG-IN; SOFTWARE; BLINKING; ACCURATE; DYES;
D O I
10.1038/s41598-020-72812-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Single-molecule-localization-microscopy (SMLM) enables superresolution imaging of biological samples down to similar to 10-20 nm and in single molecule detail. However, common SMLM reconstruction largely disregards information embedded in the entire intensity trajectories of individual emitters. Here, we develop and demonstrate an approach, termed time-correlated-SMLM (tcSMLM), that uses such information for enhancing SMLM reconstruction. Specifically, tcSMLM is shown to increase the spatial resolution and fidelity of SMLM reconstruction of both simulated and experimental data; esp. upon acquisition under stringent conditions of low SNR, high acquisition rate and high density of emitters. We further provide detailed guidelines and optimization procedures for effectively applying tcSMLM to data of choice. Importantly, our approach can be readily added in tandem to multiple SMLM and related superresolution reconstruction algorithms. Thus, we expect that our approach will become an effective and readily accessible tool for enhancing SMLM and superresolution imaging.
引用
收藏
页数:17
相关论文
共 44 条
[1]   Multiple signal classification algorithm for super-resolution fluorescence microscopy [J].
Agarwal, Krishna ;
Machan, Radek .
NATURE COMMUNICATIONS, 2016, 7
[2]   Identification of clustering artifacts in photoactivated localization microscopy [J].
Annibale, Paolo ;
Vanni, Stefano ;
Scarselli, Marco ;
Rothlisberger, Ursula ;
Radenovic, Aleksandra .
NATURE METHODS, 2011, 8 (07) :527-528
[3]   Exploiting the capabilities of modern GPUs for dense matrix computations [J].
Barrachina, Sergio ;
Castillo, Maribel ;
Igual, Francisco D. ;
Mayo, Rafael ;
Quintana-Orti, Enrique S. ;
Quintana-Orti, Gregorio .
CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, 2009, 21 (18) :2457-2477
[4]   Multicolor super-resolution imaging with photo-switchable fluorescent probes [J].
Bates, Mark ;
Huang, Bo ;
Dempsey, Graham T. ;
Zhuang, Xiaowei .
SCIENCE, 2007, 317 (5845) :1749-1753
[5]   Imaging intracellular fluorescent proteins at nanometer resolution [J].
Betzig, Eric ;
Patterson, George H. ;
Sougrat, Rachid ;
Lindwasser, O. Wolf ;
Olenych, Scott ;
Bonifacino, Juan S. ;
Davidson, Michael W. ;
Lippincott-Schwartz, Jennifer ;
Hess, Harald F. .
SCIENCE, 2006, 313 (5793) :1642-1645
[6]   Bleaching/blinking assisted localization microscopy for superresolution imaging using standard fluorescent molecules [J].
Burnette, Dylan T. ;
Sengupta, Prabuddha ;
Dai, Yuhai ;
Lippincott-Schwartz, Jennifer ;
Kachar, Bechara .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (52) :21081-21086
[7]  
Cox S, 2012, NAT METHODS, V9, P195, DOI [10.1038/NMETH.1812, 10.1038/nmeth.1812]
[8]  
Dempsey GT, 2011, NAT METHODS, V8, P1027, DOI [10.1038/NMETH.1768, 10.1038/nmeth.1768]
[9]   Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI) [J].
Dertinger, T. ;
Colyer, R. ;
Iyer, G. ;
Weiss, S. ;
Enderlein, J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (52) :22287-22292
[10]   Achieving increased resolution and more pixels with Superresolution Optical Fluctuation Imaging (SOFI) [J].
Dertinger, Thomas ;
Colyer, Ryan ;
Vogel, Robert ;
Enderlein, Joerg ;
Weiss, Shimon .
OPTICS EXPRESS, 2010, 18 (18) :18875-18885