The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated

被引:201
作者
Jermiin, LS [1 ]
Ho, SYW
Ababneh, F
Robinson, J
Larkum, AWD
机构
[1] Univ Sydney, Sch Biol Sci, Sydney, NSW 2006, Australia
[2] Univ Sydney, Sydney Univ Biol Informat & Technol Ctr, Sydney, NSW 2006, Australia
[3] Univ Sydney, Sch Math & Stat, Sydney, NSW 2006, Australia
基金
澳大利亚研究理事会;
关键词
sequence evolution; phylogenetics; phylogenetic assumptions; stationarity; compositional heterogeneity; compositional homogeneity; Monte Carlo simulation;
D O I
10.1080/10635150490468648
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
[No abstract available]
引用
收藏
页码:638 / 643
页数:6
相关论文
共 62 条
[11]   Modeling compositional heterogeneity [J].
Foster, PG .
SYSTEMATIC BIOLOGY, 2004, 53 (03) :485-495
[12]   Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria [J].
Foster, PG ;
Jermiin, LS ;
Hickey, DA .
JOURNAL OF MOLECULAR EVOLUTION, 1997, 44 (03) :282-288
[13]   Inferring pattern and process: Maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis [J].
Galtier, N ;
Gouy, M .
MOLECULAR BIOLOGY AND EVOLUTION, 1998, 15 (07) :871-879
[14]   INFERRING PHYLOGENIES FROM DNA-SEQUENCES OF UNEQUAL BASE COMPOSITIONS [J].
GALTIER, N ;
GOUY, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (24) :11317-11321
[15]   A nonhyperthermophilic common ancestor to extant life forms [J].
Galtier, N ;
Tourasse, N ;
Gouy, M .
SCIENCE, 1999, 283 (5399) :220-221
[16]   Estimation of evolutionary distances under stationary and nonstationary models of nucleotide substitution [J].
Gu, X ;
Li, WH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (11) :5899-5905
[17]   Bias-corrected paralinear and LogDet distances and tests of molecular clocks and phylogenies under nonstationary nucleotide frequencies [J].
Gu, X ;
Li, WH .
MOLECULAR BIOLOGY AND EVOLUTION, 1996, 13 (10) :1375-1383
[18]  
HASEGAWA M, 1993, J MOL EVOL, V36, P380, DOI 10.1007/BF00182185
[19]  
HASHIMOTO T, 1994, MOL BIOL EVOL, V11, P65
[20]  
HASHIMOTO T, 1995, MOL BIOL EVOL, V12, P782