The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated

被引：200

作者：

Jermiin, LS ^{[1
]}

Ho, SYW

Ababneh, F

Robinson, J

Larkum, AWD

机构：

[1] Univ Sydney, Sch Biol Sci, Sydney, NSW 2006, Australia

[2] Univ Sydney, Sydney Univ Biol Informat & Technol Ctr, Sydney, NSW 2006, Australia

[3] Univ Sydney, Sch Math & Stat, Sydney, NSW 2006, Australia

来源：

SYSTEMATIC BIOLOGY | 2004年 / 53卷 / 04期

基金：

澳大利亚研究理事会;

关键词：

sequence evolution; phylogenetics; phylogenetic assumptions; stationarity; compositional heterogeneity; compositional homogeneity; Monte Carlo simulation;

D O I：

10.1080/10635150490468648

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

[No abstract available]

引用

页码：638 / 643

页数：6

共 62 条

[1] [Anonymous], 2001, PHYLOGENETIC ANAL US
[2] Distance measures in terms of substitution processes
Baake, E
von Haeseler, A
[J]. THEORETICAL POPULATION BIOLOGY, 1999, 55 (02) : 166 - 175
[3] A TEST FOR SYMMETRY IN CONTINGENCY TABLES
BOWKER, AH
[J]. JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 1948, 43 (244) : 572 - 574
[4] Bias in phylogenetic reconstruction of vertebrate rhodopsin sequences
Chang, BSW
Campbell, DL
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (08) : 1220 - 1231
[5] Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference
Conant, GC
Lewis, PO
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 2001, 18 (06) : 1024 - 1033
[6] The evolution of strand-specific compositional bias. A case study in the hymenopteran mitochondrial 16S rRNA gene
Dowton, M
Austin, AD
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 1997, 14 (01) : 109 - 112
[7] EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH
FELSENSTEIN, J
[J]. JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) : 368 - 376
[8] Felsenstein J., 2002, PHYLOGENY INFERENCE
[9] TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY
FITCH, WM
[J]. SYSTEMATIC ZOOLOGY, 1971, 20 (04): : 406 - &
[10] Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions
Foster, PG
Hickey, DA
[J]. JOURNAL OF MOLECULAR EVOLUTION, 1999, 48 (03) : 284 - 290

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