Tn7-Based Device for Calibrated Heterologous Gene Expression in Pseudomonas putida

被引:133
作者
Zobel, Sebastian [1 ]
Benedetti, Ilaria [2 ]
Eisenbach, Lara [1 ]
de Lorenzo, Victor [2 ]
Wierckx, Nick [1 ]
Blank, Lars M. [1 ]
机构
[1] Rhein Westfal TH Aachen, Inst Appl Microbiol, D-52074 Aachen, Germany
[2] CSIC, Ctr Nacl Biotecnol, Syst Biol Program, Madrid 28049, Spain
来源
ACS SYNTHETIC BIOLOGY | 2015年 / 4卷 / 12期
关键词
synthetic biology; Tn7; transposon; synthetic promoters; translational coupler; bicistronic design; Pseudomonas putida; BROAD-HOST-RANGE; COMPLETE GENOME SEQUENCE; SYNTHETIC PROMOTER LIBRARIES; ESCHERICHIA-COLI PROMOTERS; SOLVENT-TOLERANT; STATIONARY-PHASE; FOREIGN GENES; COPY NUMBER; VECTORS; CONSTRUCTION;
D O I
10.1021/acssynbio.5b00058
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The soil bacterium Pseudomonas putida is increasingly attracting considerable interest as a platform for advanced metabolic engineering through synthetic biology approaches. However, genomic context, gene copy number, and transcription/translation interplay often introduce considerable uncertainty to the design of reliable genetic constructs. In this work, we have established a standardized heterologous expression device in which the promoter strength is the only variable; the remaining parameters of the flow have stable default values. To this end, we tailored a mini-Tn7 delivery transposon vector that inserts the constructs in a single genomic locus of P. putida's chromosome. This was then merged with a promoter insertion site, an unvarying translational coupler, and a downstream location for placing the gene(s) of interest under fixed assembly rules. This arrangement was exploited to benchmark a collection of synthetic promoters with low transcriptional noise in this bacterial host. Growth experiments and flow cytometry with singlecopy promoter GFP constructs revealed a robust, constitutive behavior of these promoters, whose strengths and properties could be faithfully compared. This standardized expression device significantly extends the repertoire of tools available for reliable metabolic engineering and other genetic enhancements of P. putida.
引用
收藏
页码:1341 / 1351
页数:11
相关论文
共 73 条
  • [1] REGULATOR AND ENZYME SPECIFICITIES OF THE TOL PLASMID-ENCODED UPPER PATHWAY FOR DEGRADATION OF AROMATIC-HYDROCARBONS AND EXPANSION OF THE SUBSTRATE RANGE OF THE PATHWAY
    ABRIL, MA
    MICHAN, C
    TIMMIS, KN
    RAMOS, JL
    [J]. JOURNAL OF BACTERIOLOGY, 1989, 171 (12) : 6782 - 6790
  • [2] SPECIFIC-PURPOSE PLASMID CLONING VECTORS .2. BROAD HOST RANGE, HIGH COPY NUMBER, RSF1010-DERIVED VECTORS, AND A HOST-VECTOR SYSTEM FOR GENE CLONING IN PSEUDOMONAS
    BAGDASARIAN, M
    LURZ, R
    RUCKERT, B
    FRANKLIN, FCH
    BAGDASARIAN, MM
    FREY, J
    TIMMIS, KN
    [J]. GENE, 1981, 16 (1-3) : 237 - 247
  • [3] Metabolic response of Pseudomonas putida during redox biocatalysis in the presence of a second octanol phase
    Blank, Lars M.
    Ionidis, Georgios
    Ebert, Birgitta E.
    Buehler, Bruno
    Schmid, Andreas
    [J]. FEBS JOURNAL, 2008, 275 (20) : 5173 - 5190
  • [4] Cooperative binding mode of the inhibitors of R6K replication, π dimers
    Bowers, Lisa M.
    Filutowicz, Marcin
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2008, 377 (03) : 609 - 615
  • [5] A COMPLEMENTATION ANALYSIS OF RESTRICTION AND MODIFICATION OF DNA IN ESCHERICHIA COLI
    BOYER, HW
    ROULLAND.D
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1969, 41 (03) : 459 - &
  • [6] The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress
    Chavarria, Max
    Nikel, Pablo I.
    Perez-Pantoja, Danilo
    Lorenzo, Victor
    [J]. ENVIRONMENTAL MICROBIOLOGY, 2013, 15 (06) : 1772 - 1785
  • [7] A Tn7-based broad-range bacterial cloning and expression system
    Choi, KH
    Gaynor, JB
    White, KG
    Lopez, C
    Bosio, CM
    Karkhoff-Schweizer, RR
    Schweizer, HP
    [J]. NATURE METHODS, 2005, 2 (06) : 443 - 448
  • [8] WebLogo: A sequence logo generator
    Crooks, GE
    Hon, G
    Chandonia, JM
    Brenner, SE
    [J]. GENOME RESEARCH, 2004, 14 (06) : 1188 - 1190
  • [9] Construction of Mobilizable Mini-Tn7 Vectors for Bioluminescent Detection of Gram-Negative Bacteria and Single-Copy Promoter lux Reporter Analysis
    Damron, F. Heath
    McKenney, Elizabeth S.
    Barbier, Mariette
    Liechti, George W.
    Schweizer, Herbert P.
    Goldberg, Joanna B.
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2013, 79 (13) : 4149 - 4153
  • [10] Construction and model-based analysis of a promoter library for E-coli:: an indispensable tool for metabolic engineering
    De Mey, Marjan
    Maertens, Jo
    Lequeux, Gaspard J.
    Soetaert, Wim K.
    Vandamme, Erick J.
    [J]. BMC BIOTECHNOLOGY, 2007, 7 (1)