O-GLYCBASE version 2.0: A revised database of O-glycosylated proteins

被引：100
作者：
Hansen, JE
Lund, O
Rapacki, K
Brunak, S
机构：
[1] Ctr. for Biol. Sequence Analysis, Technical University of Denmark, Building 206
来源：
NUCLEIC ACIDS RESEARCH | 1997年 / 25卷 / 01期
关键词：
D O I：
10.1093/nar/25.1.278
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
O-GLYCBASE is an updated database of information on glycoproteins and their O-linked glycosylation sites. Entries are compiled and revised from the literature, and from the SWISS-PROT database. Entries include information about species, sequence, glycosylation sites and glycan type, O-GLYCBASE is now fully cross-referenced to the SWISS-PROT, PIR, PROSITE, PDB, EMBL, HSSP LISTA and MIM databases. Compared with version 1.0 the number of entries have increased by 34%. Revision of the O-glycan assignment was performed on 20% of the entries. Sequence logos displaying the acceptor specificity patterns for the GalNAc, mannose and GlcNAc transferases are shown. The O-GLYCBASE database is available through WWW or by anonymous FTP.
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页码：278 / 282
页数：5
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