The complete chloroplast genome sequence of Chinese wild grape Vitis amurensis (Vitaceae: Vitis L.)

被引:9
作者
Xie, Haikun [1 ]
Jiao, Jian [1 ]
Fan, Xiucai [1 ]
Zhang, Ying [1 ]
Jiang, Jianfu [1 ]
Sun, Haisheng [1 ]
Liu, Chonghuai [1 ]
机构
[1] Chinese Acad Agr Sci, Zhengzhou Fruit Res Inst, Zhengzhou 450009, Peoples R China
关键词
V; amurensis; High-throughput sequencing; Chloroplast genome; MITObim; ANTIOXIDANT PROPERTIES; MITOCHONDRIAL GENOMES; RESISTANCE; LEAF; STEM;
D O I
10.1007/s12686-016-0615-y
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
Vitis amurensis is a species of wild grape with high ecological, medicinal, and economic values. Here, the complete chloroplast genome of this plant was assembled from whole-genome high-throughput sequencing data. The circular double-stranded DNA molecule is 160,953 bp in size, including a pair of inverted repeats (26,354 bp each) separated by large (89,187 bp) and small (19,058 bp) single- copy regions. The chloroplast genome contains 133 genes, including 88 protein-coding genes (80 PCG species), 37 transfer RNA genes (29 tRNA species) and eight ribosomal RNA genes (four rRNA species), 20 of which are duplicated, including eight protein-coding, eight tRNA, and four rRNA genes. The base composition is asymmetric (30.93 % A, 19.07 % C, 18.33 % G, 31.67 % T) with an overall A + T content of 62.60 %. A phylogenetic analysis based on complete chloroplast genome sequences showed that V. amurensis is closely related to V. vinifera, V. aestivalis, and V. rotundifolia.
引用
收藏
页码:43 / 46
页数:4
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