NMR contributions to structural dynamics studies of intrinsically disordered proteins

被引:136
作者
Konrat, Robert [1 ]
机构
[1] Univ Vienna, Max F Perutz Labs, Dept Struct & Computat Biol, A-1030 Vienna, Austria
基金
奥地利科学基金会;
关键词
Intrinsically disordered proteins; Protein meta-structure; Structural biology; Biomolecular NMR; EPR spectroscopy; NMR spin relaxation; RESIDUAL DIPOLAR COUPLINGS; NUCLEAR-MAGNETIC-RESONANCE; CHEMICAL-SHIFTS; UNFOLDED PROTEINS; RELAXATION; DOMAIN; STATES; ENSEMBLES; PROPENSITIES; BIOMOLECULES;
D O I
10.1016/j.jmr.2013.11.011
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Intrinsically disordered proteins (IDPs) are characterized by substantial conformational plasticity. Given their inherent structural flexibility X-ray crystallography is not applicable to study these proteins. In contrast, NMR spectroscopy offers unique opportunities for structural and dynamic studies of IDPs. The past two decades have witnessed significant development of NMR spectroscopy that couples advances in spin physics and chemistry with a broad range of applications. This article will summarize key advances in basic physical-chemistry and NMR methodology, outline their limitations and envision future R&D directions. (c) 2013 The Author. Published by Elsevier Inc. All rights reserved.
引用
收藏
页码:74 / 85
页数:12
相关论文
共 58 条
[1]   Determination of the Free Energy Landscape of α-Synuclein Using Spin Label Nuclear Magnetic Resonance Measurements [J].
Allison, Jane R. ;
Varnai, Peter ;
Dobson, Christopher M. ;
Vendruscolo, Michele .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2009, 131 (51) :18314-18326
[2]   NMR spectroscopy brings invisible protein states into focus [J].
Baldwin, Andrew J. ;
Kay, Lewis E. .
NATURE CHEMICAL BIOLOGY, 2009, 5 (11) :808-814
[3]   Utilization of site-directed spin labeling and high-resolution heteronuclear nuclear magnetic resonance for global fold determination of large proteins with limited nuclear overhauser effect data [J].
Battiste, JL ;
Wagner, G .
BIOCHEMISTRY, 2000, 39 (18) :5355-5365
[4]   Back to units of protein folding [J].
Berezovsky, IN ;
Trifonov, EN .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2002, 20 (03) :315-316
[5]   NMR: prediction of protein flexibility [J].
Berjanskii, Mark ;
Wishart, David S. .
NATURE PROTOCOLS, 2006, 1 (02) :683-688
[6]   Exclusively Heteronuclear 13C-Detected Amino-Acid-Selective NMR Experiments for the Study of Intrinsically Disordered Proteins (IDPs) [J].
Bermel, Wolfgang ;
Bertini, Ivano ;
Chill, Jordan ;
Felli, Isabella C. ;
Haba, Noam ;
Kumar, Vasantha M. V. ;
Pierattelli, Roberta .
CHEMBIOCHEM, 2012, 13 (16) :2425-2432
[7]   A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering [J].
Bernadó, P ;
Blanchard, L ;
Timmins, P ;
Marion, D ;
Ruigrok, RWH ;
Blackledge, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (47) :17002-17007
[8]   High-Resolution Characterization of Intrinsic Disorder in Proteins: Expanding the Suite of 13C-Detected NMR Spectroscopy Experiments to Determine Key Observables [J].
Bertini, Ivano ;
Felli, Isabella C. ;
Gonnelli, Leonardo ;
Kumar, Vasantha M. V. ;
Pierattelli, Roberta .
CHEMBIOCHEM, 2011, 12 (15) :2347-2352
[9]   Structural Impact of Proline-Directed Pseudophosphorylation at AT8, AT100, and PHF1 Epitopes on 441-Residue Tau [J].
Bibow, Stefan ;
Ozenne, Valery ;
Biernat, Jacek ;
Blackledge, Martin ;
Mandelkow, Eckhard ;
Zweckstetter, Markus .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (40) :15842-15845
[10]   Determination of Secondary Structure Populations in Disordered States of Proteins Using Nuclear Magnetic Resonance Chemical Shifts [J].
Camilloni, Carlo ;
De Simone, Alfonso ;
Vranken, Wim F. ;
Vendruscolo, Michele .
BIOCHEMISTRY, 2012, 51 (11) :2224-2231