The SYSTERS protein sequence cluster set

被引：60
作者：
Krause, A [1 ]
Stoye, J [1 ]
Vingron, M [1 ]
机构：
[1] Deutsch Krebsforschungszentrum, D-69120 Heidelberg, Germany
来源：
NUCLEIC ACIDS RESEARCH | 2000年 / 28卷 / 01期
关键词：
D O I：
10.1093/nar/28.1.270
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
The SYSTERS (short for SYSTEmatic Re-Searching) protein sequence cluster set consists of the classification of all sequences from SWISS-PROT and PIR into disjoint protein family clusters and hierarchically into superfamily and subfamily clusters. The cluster set can be searched with a sequence using the SSMAL search tool or a traditional database search tool like BLAST or FASTA. Additionally a multiple alignment is generated for each cluster and annotated with domain information from the Pfam database of protein domain families. A taxonomic overview of the organisms covered by a cluster is given based on the NCBI taxonomy. The cluster set is available for querying and browsing at http://www.dkfz-heidelberg. de/tbi/services/cluster/systersform.
引用
收藏
页码：270 / 272
页数：3
相关论文
共 29 条
[1]  
Altschul SF, 1996, METHOD ENZYMOL, V266, P460
[2]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[3]  
ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
[4]  
[Anonymous], [No title captured]
[5]   The ENZYME database in 2000 [J].
Bairoch, A .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :304-305
[6]   The ENZYME data bank in 1999 [J].
Bairoch, A .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :310-311
[7]   The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 [J].
Bairoch, A ;
Apweiler, R .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :45-48
[8]   The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999 [J].
Bairoch, A ;
Apweiler, R .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :49-54
[9]   The EMBL Nucleotide Sequence Database [J].
Baker, W ;
van den Broek, A ;
Camon, E ;
Hingamp, P ;
Sterk, P ;
Stoesser, G ;
Tuli, MA .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :19-23
[10]   The PIR-International Protein Sequence Database [J].
Barker, WC ;
Garavelli, JS ;
McGarvey, PB ;
Marzec, CR ;
Orcutt, BC ;
Srinivasarao, GY ;
Yeh, LSL ;
Ledley, RS ;
Mewes, HW ;
Pfeiffer, F ;
Tsugita, A ;
Wu, C .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :39-43
123