dPCR vs. qPCR: The role of Poisson statistics at low concentrations

被引:9
作者
Tellinghuisen, Joel [1 ]
机构
[1] Vanderbilt Univ, Dept Chem, Nashville, TN 37235 USA
关键词
dPCR; qPCR; Data analysis; Poisson statistics; Statistical precision;
D O I
10.1016/j.ab.2020.113946
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The ultimate precision in both dPCR and qPCR experiments is limited by the Poisson statistics in the total number m of template molecules in the sample, giving relative standard deviation 1/root m . This means that precision is limited by sample volume at low concentrations. Accordingly qPCR instruments, used in dPCR mode, can give better precision than dPCR instruments in this limit. For example, 13% standard deviation can be achieved with a 96-well plate for number concentrations similar to 20-5000 mL(-1). For fixed m, qPCR loses to dPCR by a factor of-2 in precision when calibration is needed.
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页数:3
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共 32 条
  • [1] RT-qPCR and RT-Digital PCR: A Comparison of Different Platforms for the Evaluation of Residual Disease in Chronic Myeloid Leukemia
    Alikian, Mary
    Whale, Alexandra S.
    Akiki, Susanna
    Piechocki, Kim
    Torrado, Celia
    Myint, Thet
    Cowen, Simon
    Griffiths, Michael
    Reid, Alistair G.
    Apperley, Jane
    White, Helen
    Huggett, Jim F.
    Foroni, Letizia
    [J]. CLINICAL CHEMISTRY, 2017, 63 (02) : 525 - 531
  • [2] Bevington P.R., 1969, DATA REDUCTION ERROR
  • [3] Single molecule detection in nanofluidic digital array enables accurate measurement of DNA copy number
    Bhat, Somanath
    Herrmann, Jan
    Armishaw, Paul
    Corbisier, Philippe
    Emslie, Kerry R.
    [J]. ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2009, 394 (02) : 457 - 467
  • [4] DNA copy number concentration measured by digital and droplet digital quantitative PCR using certified reference materials
    Corbisier, Philippe
    Pinheiro, Leonardo
    Mazoua, Stephane
    Kortekaas, Anne-Marie
    Chung, Pui Yan Jenny
    Gerganova, Tsvetelina
    Roebben, Gert
    Emons, Hendrik
    Emslie, Kerry
    [J]. ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2015, 407 (07) : 1831 - 1840
  • [5] Droplet microfluidics driven by gradients of confinement
    Dangla, Remi
    Kayi, S. Cagri
    Baroud, Charles N.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (03) : 853 - 858
  • [6] Calibration-free assays on standard real-time PCR devices
    Debski, Pawel R.
    Gewartowski, Kamil
    Bajer, Seweryn
    Garstecki, Piotr
    [J]. SCIENTIFIC REPORTS, 2017, 7
  • [7] Comparative analysis between RQ-PCR and digital-droplet-PCR of immunoglobulin/T-cell receptor gene rearrangements to monitor minimal residual disease in acute lymphoblastic leukaemia
    Della Starza, Irene
    Nunes, Vittorio
    Cavalli, Marzia
    De Novi, Lucia Anna
    Ilari, Caterina
    Apicella, Valerio
    Vitale, Antonella
    Testi, Anna Maria
    Del Giudice, Ilaria
    Chiaretti, Sabina
    Foa, Robin
    Guarini, Anna
    [J]. BRITISH JOURNAL OF HAEMATOLOGY, 2016, 174 (04) : 541 - 549
  • [8] Statistical Models for the Analysis and Design of Digital Polymerase Chain Reaction (dPCR) Experiments
    Dorazio, Robert M.
    Hunter, Margaret E.
    [J]. ANALYTICAL CHEMISTRY, 2015, 87 (21) : 10886 - 10893
  • [9] Real-Time PCR and Droplet Digital PCR: two techniques for detection of the JAK2V617F mutation in Philadelphia-negative chronic myeloproliferative neoplasms
    Fontanelli, G.
    Barate, C.
    Ciabatti, E.
    Guerrini, F.
    Grassi, S.
    Del Re, M.
    Morganti, R.
    Petrini, I.
    Arici, R.
    Barsotti, S.
    Metelli, M. R.
    Danesi, R.
    Galimberti, S.
    [J]. INTERNATIONAL JOURNAL OF LABORATORY HEMATOLOGY, 2015, 37 (06) : 766 - 773
  • [10] Comparison of Droplet Digital PCR to Real-Time PCR for Quantitative Detection of Cytomegalovirus
    Hayden, R. T.
    Gu, Z.
    Ingersoll, J.
    Abdul-Ali, D.
    Shi, L.
    Pounds, S.
    Caliendo, A. M.
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2013, 51 (02) : 540 - 546