Bacillus bingmayongensis sp nov., isolated from the pit soil of Emperor Qin's Terra-cotta warriors in China

被引:47
作者
Liu, Bo [1 ]
Liu, Guo-Hong [1 ]
Hu, Gui-Ping [1 ,2 ]
Cetin, Sengonca [3 ]
Lin, Nai-Quan [2 ]
Tang, Jian-Yang [1 ]
Tang, Wei-Qi [2 ]
Lin, Ying-Zhi [1 ]
机构
[1] Fujian Acad Agr Sci, Agr Bioresource Inst, Fuzhou 350003, Fujian, Peoples R China
[2] Fujian Agr & Forest Univ, Fuzhou 350002, Fujian, Peoples R China
[3] Univ Bonn, Inst Nutzpflanzenwissensch & Ressourcenschutz INR, D-53115 Bonn, Germany
来源
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY | 2014年 / 105卷 / 03期
关键词
Bacillus bingmayongensis; Emperor Qin's Terra-cotta Warriors; Polyphasic taxonomy; Average nucleotide identity; 16S RIBOSOMAL-RNA; DNA-DNA HYBRIDIZATION; SPECIES DEFINITION; GENOME SEQUENCE; GYRB GENES; COMB; NOV; CEREUS; PHYLOGENIES; SHEWANELLA; TAXONOMY;
D O I
10.1007/s10482-013-0102-3
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Bacillus-like isolate, strain FJAT-13831(T), isolated from the No. 1 pit soil of Emperor Qin's Terra-cotta Warriors in Xi'an City, China, was studied to determine its taxonomic status. Dominant fatty acids of this organism included iso-C-15:0, iso-C-17:0, C-16:0, iso-C-13:0, anteiso-C-15:0, and iso-C-17:1 omega 5c. Comparative 16S rRNA gene sequence analysis confirmed the affiliation of this isolate to the genus Bacillus and indicated that it was closely related to Bacillus pseudomycoides DSM 12442(T) (99.72 % similarity). A phylogenetic analysis of the gyrB gene sequence similarities exhibited independent clustering of the isolate FJAT-13831(T) and showed 93.8 % (< 95 %) sequence similarity with its closest phylogenetic neighbour B. pseudomycoides DSM 12442(T). Separate standing of the strain FJAT-13831(T) was supported by a whole genome-based phylogenetic analysis with an average nucleotide identity value of 91.47 (< 95 %) between isolate FJAT-13831(T) and B. pseudomycoides DSM 12442(T) and was consistent with the results of DNA-DNA hybridization (69.1 % relatedness). These findings support the conclusion that the isolate FJAT-13831(T) represents a novel species, for which the name Bacillus bingmayongensis sp. nov. is proposed. The type strain is FJAT-13831(T) (= CGMCC 1.12043(T) = DSM 25427(T)).
引用
收藏
页码:501 / 510
页数:10
相关论文
共 54 条
  • [1] Proposal of Lysinibacillus boronitolerans gen. nov sp nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov.
    Ahmed, Iftikhar
    Yokota, Akira
    Yamazoe, Atsushi
    Fujiwara, Toru
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 : 1117 - 1125
  • [2] [Anonymous], 1989, Molecular Cloning: A Laboratory
  • [3] Atlas R. M., 1993, HDB MICROBIOLOGICAL
  • [4] Bacillus rigui sp. nov., isolated from wetland fresh water
    Baik, Keun Sik
    Lim, Chae Hong
    Park, Seong Chan
    Kim, Eun Mi
    Rhee, Moon Soo
    Seong, Chi Nam
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2010, 60 : 2204 - 2209
  • [5] Molecular signatures for Bacillus species: demarcation of the Bacillus subtilis and Bacillus cereus clades in molecular terms and proposal to limit the placement of new species into the genus Bacillus
    Bhandari, Vaibhav
    Ahmod, Nadia Z.
    Shah, Haroun N.
    Gupta, Radhey S.
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 : 2712 - 2726
  • [6] Bacillus hunanensis sp nov., a slightly halophilic bacterium isolated from non-saline forest soil
    Chen, Yi-Guang
    Hao, Di-Fei
    Chen, Qi-Hui
    Zhang, Yu-Qin
    Liu, Jian-Ben
    He, Jian-Wu
    Tang, Shu-Kun
    Li, Wen-Jun
    [J]. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2011, 99 (03): : 481 - 488
  • [7] Cohn F., 1872, BEITR BIOL PFLANZ, V1, P127
  • [8] DELEY J, 1970, EUR J BIOCHEM, V12, P133
  • [9] FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
  • [10] Bacillus tequilensis sp nov., isolated from a 2000-year-old Mexican shaft-tomb, is closely related to Bacillus subtilis
    Gatson, Joshua W.
    Benz, Bruce F.
    Chandrasekaran, Chitra
    Satomi, Masataka
    Venkateswaran, Kasthuri
    Hart, Mark E.
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2006, 56 : 1475 - 1484