Perspectives on Unidirectional versus Divergent Transcription

被引：19

作者：

Duttke, Sascha H. C. ^{[1
]}

Lacadie, Scott A. ^{[4
]}

Ibrahim, Mahmoud M. ^{[4
,5
]}

Glass, Christopher K. ^{[2
,3
]}

Corcoran, David L. ^{[7
]}

Benner, Christopher ^{[6
]}

Heinz, Sven ^{[2
,6
]}

Kadonaga, James T. ^{[1
]}

Ohler, Uwe ^{[4
,5
]}

机构：

[1] Univ Calif San Diego, Mol Biol Sect, La Jolla, CA 92093 USA

[2] Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA

[3] Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA

[4] Max Delbruck Ctr Mol Med, Berlin Inst Med Syst Biol, D-13125 Berlin, Germany

[5] Humboldt Univ, Dept Biol, D-10115 Berlin, Germany

[6] Salk Inst Biol Studies, La Jolla, CA 92037 USA

[7] Duke Univ, Ctr Genom & Computat Biol, Durham, NC 27708 USA

来源：

MOLECULAR CELL | 2015年 / 60卷 / 03期

关键词：

INITIATION; DIRECTIONALITY; PROMOTERS;

D O I：

10.1016/j.molcel.2015.10.014

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

引用

页码：348 / 349

页数：2

共 10 条

[1] Human Gene Promoters Are Intrinsically Bidirectional [J].

Andersson, Robin ;

Chen, Yun ;

Core, Leighton ;

Lis, John T. ;

Sandelin, Albin ;

Jensen, Torben Heick .

MOLECULAR CELL, 2015, 60 (03) :346-347

[2] Nuclear stability and transcriptional directionality separate functionally distinct RNA species [J].

Andersson, Robin ;

Andersen, Peter Refsing ;

Valen, Eivind ;

Core, Leighton J. ;

Bornholdt, Jette ;

Boyd, Mette ;

Jensen, Torben Heick ;

Sandelin, Albin .

NATURE COMMUNICATIONS, 2014, 5

[3] Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers [J].

Core, Leighton J. ;

Martins, Andre L. ;

Danko, Charles G. ;

Waters, Colin T. ;

Siepel, Adam ;

Lis, John T. .

NATURE GENETICS, 2014, 46 (12) :1311-1320

[4] Human Promoters Are Intrinsically Directional [J].

Duttke, Sascha H. C. ;

Lacadie, Scott A. ;

Ibrahim, Mahmoud M. ;

Glass, Christopher K. ;

Corcoran, David L. ;

Benner, Christopher ;

Heinz, Sven ;

Kadonaga, James T. ;

Ohler, Uwe .

MOLECULAR CELL, 2015, 57 (04) :674-684

[5] A code for transcription initiation in mammalian genomes [J].

Frith, Martin C. ;

Valen, Eivind ;

Krogh, Anders ;

Hayashizaki, Yoshihide ;

Carninci, Piero ;

Sandelin, Albin .

GENOME RESEARCH, 2008, 18 (01) :1-12

[6] Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription [J].

Lam, Michael T. Y. ;

Cho, Han ;

Lesch, Hanna P. ;

Gosselin, David ;

Heinz, Sven ;

Tanaka-Oishi, Yumiko ;

Benner, Christopher ;

Kaikkonen, Minna U. ;

Kim, Aneeza S. ;

Kosaka, Mika ;

Lee, Cindy Y. ;

Watt, Andy ;

Grossman, Tamar R. ;

Rosenfeld, Michael G. ;

Evans, Ronald M. ;

Glass, Christopher K. .

NATURE, 2013, 498 (7455) :511-+

[7] Native Elongating Transcript Sequencing Reveals Human Transcriptional Activity at Nucleotide Resolution [J].

Mayer, Andreas ;

di Iulio, Julia ;

Maleri, Seth ;

Eser, Umut ;

Vierstra, Jeff ;

Reynolds, Alex ;

Sandstrom, Richard ;

Stamatoyannopoulos, John A. ;

Churchman, L. Stirling .

CELL, 2015, 161 (03) :541-554

[8] Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality [J].

Ntini, Evgenia ;

Jaervelin, Aino I. ;

Bornholdt, Jette ;

Chen, Yun ;

Boyd, Mette ;

Jorgensen, Mette ;

Andersson, Robin ;

Hoof, Ilka ;

Schein, Aleks ;

Andersen, Peter R. ;

Andersen, Pia K. ;

Preker, Pascal ;

Valen, Eivind ;

Zhao, Xiaobei ;

Pelechano, Vicent ;

Steinmetz, Lars M. ;

Sandelin, Albin ;

Jensen, Torben Heick .

NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2013, 20 (08) :923-+

[9] Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin [J].

Scruggs, Benjamin S. ;

Gilchrist, Daniel A. ;

Nechaev, Sergei ;

Muse, Ginger W. ;

Burkholder, Adam ;

Fargo, David C. ;

Adelman, Karen .

MOLECULAR CELL, 2015, 58 (06) :1101-1112

[10] RETRACTED: Genomic organization of human transcription initiation complexes (Retracted Article) [J].

Venters, Bryan J. ;

Pugh, B. Franklin .

NATURE, 2013, 502 (7469) :53-+

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