Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

被引:658
作者
Zhou, Jizhong [1 ,2 ,3 ,4 ]
Deng, Ye [2 ,3 ,5 ]
Zhang, Ping [2 ,3 ]
Xue, Kai [2 ,3 ]
Liang, Yuting [1 ,2 ,3 ]
Van Nostrand, Joy D. [2 ,3 ]
Yang, Yunfeng [1 ]
He, Zhili [2 ,3 ]
Wu, Liyou [2 ,3 ]
Stahl, David A. [6 ]
Hazen, Terry C. [7 ,8 ]
Tiedje, James M. [9 ]
Arkin, Adam P. [10 ]
机构
[1] Tsinghua Univ, Sch Environm, State Key Joint Lab Environm Simulat & Pollut Con, Beijing 100084, Peoples R China
[2] Univ Oklahoma, Inst Environm Genom, Norman, OK 73019 USA
[3] Univ Oklahoma, Dept Microbiol & Plant Biol, Norman, OK 73019 USA
[4] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Div Earth Sci, Berkeley, CA 94270 USA
[5] Chinese Acad Sci, Res Ctr Ecoenvironm Sci, Beijing 100085, Peoples R China
[6] Univ Washington, Dept Civil & Environm Engn, Seattle, WA 98195 USA
[7] Univ Tennessee, Dept Civil & Environm Engn, Knoxville, TN 37996 USA
[8] Oak Ridge Natl Lab, Biosci Div, Oak Ridge, TN 37831 USA
[9] Michigan State Univ, Ctr Microbial Ecol, E Lansing, MI 48824 USA
[10] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Phys Biosci Div, Berkeley, CA 94720 USA
基金
美国国家科学基金会;
关键词
community assembly; disturbances; metagenomics; GeoChip; remediation; HIGHLY CONTAMINATED AQUIFER; NULL MODEL ANALYSIS; MICROBIAL COMMUNITIES; CARBON SEQUESTRATION; DIVERSITY; URANIUM; NICHE; BIOREDUCTION; CONVERGENCE; COMPETITION;
D O I
10.1073/pnas.1324044111
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Unraveling the drivers of community structure and succession in response to environmental change is a central goal in ecology. Although the mechanisms shaping community structure have been intensively examined, those controlling ecological succession remain elusive. To understand the relative importance of stochastic and deterministic processes in mediating microbial community succession, a unique framework composed of four different cases was developed for fluidic and nonfluidic ecosystems. The framework was then tested for one fluidic ecosystem: a groundwater system perturbed by adding emulsified vegetable oil (EVO) for uranium immobilization. Our results revealed that groundwater microbial community diverged substantially away from the initial community after EVO amendment and eventually converged to a new community state, which was closely clustered with its initial state. However, their composition and structure were significantly different from each other. Null model analysis indicated that both deterministic and stochastic processes played important roles in controlling the assembly and succession of the groundwater microbial community, but their relative importance was time dependent. Additionally, consistent with the proposed conceptual framework but contradictory to conventional wisdom, the community succession responding to EVO amendment was primarily controlled by stochastic rather than deterministic processes. During the middle phase of the succession, the roles of stochastic processes in controlling community composition increased substantially, ranging from 81.3% to 92.0%. Finally, there are limited successional studies available to support different cases in the conceptual framework, but further well-replicated explicit time-series experiments are needed to understand the relative importance of deterministic and stochastic processes in controlling community succession.
引用
收藏
页码:E836 / E845
页数:10
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