The complete chloroplast genome of Polygonatum cirrhifolium (Wall.) Royle, a medicine herb

被引:0
作者
Liao, Pan-Hua [1 ,2 ]
Li, Dong-Ling [1 ,2 ]
Tong, Hai-Ying [1 ,2 ]
机构
[1] Jiangsu Prov & Chinese Acad Sci, Inst Bot, Nanjing, Peoples R China
[2] Jiangsu Prov Platform Conservat & Utilizat Agr Ge, Nanjing, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 01期
关键词
Polygonatum cirrhifolium (Wall; ) Royle; chloroplast genome; phylogenetic analysis;
D O I
10.1080/23802359.2020.1860698
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Polygonatum cirrhifolium (Wall.) Royle is a medicinal plant of commercial value. In the present study, we assembled the complete chloroplast genome of P. cirrhifolium. The total genome was a circular DNA molecule of 155,583 bp, which was made up of a large single copy region (84,412 bp), a small single copy region (18,427 bp), and a pair of inverted repeat regions (26,372 bp each). A total of 133 genes was annotated in the chloroplast genome, including 85 protein-coding genes, 40 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. Overall, the chloroplast genome had a GC content of 37.66%. Phylogenetic analysis showed that P. cirrhifolium was closely related to P. kingianum.
引用
收藏
页码:180 / 181
页数:2
相关论文
共 9 条
[1]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[2]   NOVOPlasty: de novo assembly of organelle genomes from whole genome data [J].
Dierckxsens, Nicolas ;
Mardulyn, Patrick ;
Smits, Guillaume .
NUCLEIC ACIDS RESEARCH, 2017, 45 (04)
[3]   The complete chloroplast genome of the rare and endangered herb Paphiopedilum dianthum (Asparagales: Orchidaceae) [J].
Hou, Na ;
Wang, Gang ;
Zhu, Yayan ;
Wang, Lianhui ;
Xu, Jiajuan .
CONSERVATION GENETICS RESOURCES, 2018, 10 (04) :709-712
[4]   Complete chloroplast genome of a medicinal species Polygonatum kingianum in China (Asparagaceae, Asparagales) [J].
Jin, Jian ;
Lao, Jia ;
Zhong, Can ;
He, Wei ;
Xie, Jing ;
Hu, Guoan ;
Liu, Hao ;
Yan, Fulin ;
Zhang, Shuihan .
MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01) :959-960
[5]   MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].
Katoh, Kazutaka ;
Standley, Daron M. .
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780
[6]   IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies [J].
Lam-Tung Nguyen ;
Schmidt, Heiko A. ;
von Haeseler, Arndt ;
Bui Quang Minh .
MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) :268-274
[7]  
Lohani Nidhi, 2011, International Journal of Biodiversity Science Ecosystem Services & Management, V7, P134, DOI 10.1080/21513732.2011.625370
[8]  
Saboon, 2016, Journal of Coastal Life Medicine, V4, P406, DOI 10.12980/jclm.4.2016J5-228
[9]  
Sharma B. D., 2014, INT J AGRICULTUREFOO, V5, P75