A Magnetic Nanobead-Based Read-Out Procedure for Rapid Detection of DNA Molecules

被引:4
作者
de la Torre, Teresa Zardan Gomez [1 ]
Herthnek, David [2 ,3 ]
Stromme, Maria [1 ]
机构
[1] Uppsala Univ, Dept Engn Sci, S-75121 Uppsala, Sweden
[2] Stockholm Univ, Dept Biochem & Biophys, Sci Life Lab, S-17121 Stockholm, Sweden
[3] Uppsala Univ, Dept Immunol Genet & Pathol, Sci Life Lab, Rudbeck Lab, S-75121 Uppsala, Sweden
基金
瑞典研究理事会;
关键词
Brownian Relaxation; DNA Macromolecules; Magnetic Nanobeads; Rapid Detection; Rolling Circle Amplification; SENSITIVE DETECTION; BIOSENSORS; OLIGONUCLEOTIDES; NANOPARTICLES; REPLICATION; DIAGNOSTICS;
D O I
10.1166/jnn.2017.13877
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The presented measurement and data analysis procedure reduces the read-out time for the volumeamplified magnetic nanobead detection assay from similar to 30 min to only 2 min, providing fast, sensitive detection of DNA molecules. The molecular detection and amplification protocol was verified using samples containing rolling circle-amplified DNA products formed from synthetic Vibrio cholerae target DNA, with a limit of detection of 5 pM. The developed read-out method could be used to rapidly identify pathogens in a variety of applications including target screening in hospitals with limited resources, in out-patient settings and in the field.
引用
收藏
页码:2861 / 2864
页数:4
相关论文
共 27 条
[1]   Bench-to-bedside review: Rapid molecular diagnostics for bloodstream infection - a new frontier? [J].
Afshari, Arash ;
Schrenzel, Jacques ;
Ieven, Margareta ;
Harbarth, Stephan .
CRITICAL CARE, 2012, 16 (03)
[2]   Biomolecular reactions studied using changes in Brownian rotation dynamics of magnetic particles [J].
Astalan, AP ;
Ahrentorp, F ;
Johansson, C ;
Larsson, K ;
Krozer, A .
BIOSENSORS & BIOELECTRONICS, 2004, 19 (08) :945-951
[3]   Homogeneous detection of single rolling circle replication products [J].
Blab, GA ;
Schmidt, T ;
Nilsson, M .
ANALYTICAL CHEMISTRY, 2004, 76 (02) :495-498
[4]   THERMAL FLUCTUATIONS OF A SINGLEDOMAIN PARTICLE [J].
BROWN, WF .
JOURNAL OF APPLIED PHYSICS, 1963, 34 (04) :1319-+
[5]   Proposed biosensors based on time-dependent properties of magnetic fluids [J].
Connolly, J ;
St Pierre, TG .
JOURNAL OF MAGNETISM AND MAGNETIC MATERIALS, 2001, 225 (1-2) :156-160
[6]   Analysis of Genes, Transcripts, and Proteins via DNA Ligation [J].
Conze, Tim ;
Shetye, Alysha ;
Tanaka, Yuki ;
Gu, Jijuan ;
Larsson, Chatarina ;
Goeransson, Jenny ;
Tavoosidana, Gholamreza ;
Soederberg, Ola ;
Nilsson, Mats ;
Landegren, Ulf .
ANNUAL REVIEW OF ANALYTICAL CHEMISTRY, 2009, 2 :215-239
[7]   Sensitive Detection of Spores Using Volume-Amplified Magnetic Nanobeads [J].
de la Torre, Teresa Zardan Gomez ;
Ke, Rongqin ;
Mezger, Anja ;
Svedlindh, Peter ;
Stromme, Maria ;
Nilsson, Mats .
SMALL, 2012, 8 (14) :2174-2177
[8]   Detection of rolling circle amplified DNA molecules using probe-tagged magnetic nanobeads in a portable AC susceptometer [J].
de la Torre, Teresa Zardan Gomez ;
Mezger, Anja ;
Herthnek, David ;
Johansson, Christer ;
Svedlindh, Peter ;
Nilsson, Mats ;
Stromme, Maria .
BIOSENSORS & BIOELECTRONICS, 2011, 29 (01) :195-199
[9]   Investigation of Immobilization of Functionalized Magnetic Nanobeads in Rolling Circle Amplified DNA Coils [J].
de la Torre, Teresa Zardan Gomez ;
Stromberg, Mattias ;
Russell, Camilla ;
Goransson, Jenny ;
Nilsson, Mats ;
Svedlindh, Peter ;
Stromme, Maria .
JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (10) :3707-3713
[10]   Detection of Rifampicin Resistance in Mycobacterium tuberculosis by Padlock Probes and Magnetic Nanobead-Based Readout [J].
Engstrom, Anna ;
de la Torre, Teresa Zardan Gomez ;
Stromme, Maria ;
Nilsson, Mats ;
Herthnek, David .
PLOS ONE, 2013, 8 (04)