Using next-generation sequencing to isolate mutant genes from forward genetic screens

被引:162
作者
Schneeberger, Korbinian [1 ]
机构
[1] Max Planck Inst Plant Breeding Res, Dept Plant Dev Biol, D-50829 Cologne, Germany
关键词
QUANTITATIVE TRAIT LOCI; BULKED SEGREGANT ANALYSIS; GENOME-WIDE ANALYSIS; CAENORHABDITIS-ELEGANS; SNP DISCOVERY; MUTATION IDENTIFICATION; DROSOPHILA-MELANOGASTER; RAPID IDENTIFICATION; ZEBRAFISH MUTATIONS; CIRCADIAN CLOCK;
D O I
10.1038/nrg3745
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The long-lasting success of forward genetic screens relies on the simple molecular basis of the characterized phenotypes, which are typically caused by mutations in single genes. Mapping the location of causal mutations using genetic crosses has traditionally been a complex, multistep procedure, but next-generation sequencing now allows the rapid identification of causal mutations at single-nucleotide resolution even in complex genetic backgrounds. Recent advances of this mapping-by-sequencing approach include methods that are independent of reference genome sequences, genetic crosses and any kind of linkage information, which make forward genetics amenable for species that have not been considered for forward genetic screens so far.
引用
收藏
页码:662 / 676
页数:15
相关论文
共 120 条
  • [1] Genome sequencing reveals agronomically important loci in rice using MutMap
    Abe, Akira
    Kosugi, Shunichi
    Yoshida, Kentaro
    Natsume, Satoshi
    Takagi, Hiroki
    Kanzaki, Hiroyuki
    Matsumura, Hideo
    Yoshida, Kakoto
    Mitsuoka, Chikako
    Tamiru, Muluneh
    Innan, Hideki
    Cano, Liliana
    Kamoun, Sophien
    Terauchi, Ryohei
    [J]. NATURE BIOTECHNOLOGY, 2012, 30 (02) : 174 - 178
  • [2] Facile mutant identification via a single parental backcross method and application of whole genome sequencing based mapping pipelines
    Allen, Robert S.
    Nakasugi, Kenlee
    Doran, Rachel L.
    Millar, Anthony A.
    Waterhouse, Peter M.
    [J]. FRONTIERS IN PLANT SCIENCE, 2013, 4
  • [3] Massively parallel sequencing of the mouse exome to accurately identify rare, induced mutations: an immediate source for thousands of new mouse models
    Andrews, T. D.
    Whittle, B.
    Field, M. A.
    Balakishnan, B.
    Zhang, Y.
    Shao, Y.
    Cho, V.
    Kirk, M.
    Singh, M.
    Xia, Y.
    Hager, J.
    Winslade, S.
    Sjollema, G.
    Beutler, B.
    Enders, A.
    Goodnow, C. C.
    [J]. OPEN BIOLOGY, 2012, 2
  • [4] Rapid Identification of a Disease Allele in Mouse Through Whole Genome Sequencing and Bulk Segregation Analysis
    Arnold, Carrie N.
    Xia, Yu
    Lin, Pei
    Ross, Charles
    Schwander, Martin
    Smart, Nora G.
    Mueller, Ulrich
    Beutler, Bruce
    [J]. GENETICS, 2011, 187 (03) : 633 - 641
  • [5] Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis
    Ashelford, Kevin
    Eriksson, Maria E.
    Allen, Christopher M.
    D'Amore, Rosalinda
    Johansson, Mikael
    Gould, Peter
    Kay, Suzanne
    Millar, Andrew J.
    Hall, Neil
    Hall, Anthony
    [J]. GENOME BIOLOGY, 2011, 12 (03):
  • [6] Next-generation mapping of Arabidopsis genes
    Austin, Ryan S.
    Vidaurre, Danielle
    Stamatiou, George
    Breit, Robert
    Provart, Nicholas J.
    Bonetta, Dario
    Zhang, Jianfeng
    Fung, Pauline
    Gong, Yunchen
    Wang, Pauline W.
    McCourt, Peter
    Guttman, David S.
    [J]. PLANT JOURNAL, 2011, 67 (04) : 715 - 725
  • [7] Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
    Baird, Nathan A.
    Etter, Paul D.
    Atwood, Tressa S.
    Currey, Mark C.
    Shiver, Anthony L.
    Lewis, Zachary A.
    Selker, Eric U.
    Cresko, William A.
    Johnson, Eric A.
    [J]. PLOS ONE, 2008, 3 (10):
  • [8] Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana
    Belfield, Eric J.
    Gan, Xiangchao
    Mithani, Aziz
    Brown, Carly
    Jiang, Caifu
    Franklin, Keara
    Alvey, Elizabeth
    Wibowo, Anjar
    Jung, Marko
    Bailey, Kit
    Kalwani, Sharan
    Ragoussis, Jiannis
    Mott, Richard
    Harberd, Nicholas P.
    [J]. GENOME RESEARCH, 2012, 22 (07) : 1306 - 1315
  • [9] Discovery of Mutations in Saccharomyces cerevisiae by Pooled Linkage Analysis and Whole-Genome Sequencing
    Birkeland, Shanda R.
    Jin, Natsuko
    Ozdemir, Alev Cagla
    Lyons, Robert H., Jr.
    Weisman, Lois S.
    Wilson, Thomas E.
    [J]. GENETICS, 2010, 186 (04) : 1127 - U132
  • [10] Identification of EMS-Induced Mutations in Drosophila melanogaster by Whole-Genome Sequencing
    Blumenstiel, Justin P.
    Noll, Aaron C.
    Griffiths, Jennifer A.
    Perera, Anoja G.
    Walton, Kendra N.
    Gilliland, William D.
    Hawley, R. Scott
    Staehling-Hampton, Karen
    [J]. GENETICS, 2009, 182 (01) : 25 - 32