共 63 条
Stabilizing Capacity of Water Bridges in Nanopore Segments of Humic Substances: A Theoretical Investigation
被引:49
作者:
Aquino, Adelia J. A.
[1
,2
]
Tunega, Daniel
[1
,2
]
Schaumann, Gabriele E.
[3
]
Haberhauer, Georg
[4
]
Gerzabek, Martin H.
[2
]
Lischka, Hans
[1
,5
,6
]
机构:
[1] Univ Vienna, Inst Theoret Chem, A-1090 Vienna, Austria
[2] Univ Bodenkultur Wien, Inst Soil Res, A-1190 Vienna, Austria
[3] Univ Koblenz Landau, Inst Environm Sci Environm & Soil Chem, D-76829 Landau, Germany
[4] ARC Seibersdorf Res, A-2444 Seibersdorf, Austria
[5] Acad Sci Czech Republ, Inst Organ Chem & Biochem, CR-16610 Prague 6, Czech Republic
[6] Ctr Biomol & Complex Mol Syst, Prague 16610 6, Czech Republic
关键词:
SOIL ORGANIC-MATTER;
DENSITY-FUNCTIONAL THEORY;
TIGHT-BINDING METHOD;
GAUSSIAN-BASIS SETS;
MOLECULAR-DYNAMICS;
ACETIC-ACID;
ANALYTICAL PYROLYSIS;
ATOMS LI;
SORPTION;
MODEL;
D O I:
10.1021/jp9054796
中图分类号:
O64 [物理化学(理论化学)、化学物理学];
学科分类号:
070304 ;
081704 ;
摘要:
Molecular simulations using density functional theory (DFUPBE and DFT/tight-binding (DFTB)) have been performed to study wetting processes of model nanopore segments in humic substances (HS). A complex of two poly(acrylic acid) trimers (trimer complex, TC) arranged in parallel alignment was used to provide the structural example for supramolecular contact of two HS chains by means of hydrogen bonds. Their interaction with a local network of water molecules represented the influence of wet spots, Displaced TC structures were constructed by horizontal motion of the chains relative to each other in order to study the capacity of the water Cluster to hold the two chains together even though their distance is too far for direct hydrogen bonding between the carboxyl groups. Geometry optimizations and molecular dynamics simulations were used to investigate the hydrogen-bonded structures formed and to compute their energetic stabilities. At shorter distances between the two oligomer chains an outer solvation was most stable. However, with increasing distance of the two polyacrylic trimers the water molecules penetrated into the inside of the created free space, keeping the two chains together by means of a hydrogen-bonded network. Significant stabilization effects of 10-20 kcal/mol were observed by this intrusion of water molecules at trimer distances of similar to 13 angstrom. The present model, therefore, strongly supports the hypothesized bridging function of water molecules in humic Substances provided a local distribution of appropriate functional groups is available in the HS matrix.
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页码:16468 / 16475
页数:8
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