Homogeneous Time Constants Promote Oscillations in Negative Feedback Loops

被引:10
作者
Blanchini, Franco [1 ]
Samaniego, Christian Cuba [2 ]
Franco, Elisa [2 ]
Giordano, Giulia [3 ]
机构
[1] Univ Udine, Dipartimento Sci Matemat Informat & Fis, I-33100 Udine, Italy
[2] Univ Calif Riverside, Dept Mech Engn, Riverside, CA 92521 USA
[3] Delft Univ Technol, Delft Ctr Syst & Control, NL-2628 CD Delft, Netherlands
来源
ACS SYNTHETIC BIOLOGY | 2018年 / 7卷 / 06期
基金
美国国家科学基金会;
关键词
oscillations; delays; time constants; feedback; biomolecular oscillators; synthetic biology; NF-KAPPA-B; CELL-CYCLE OSCILLATOR; IN-VITRO; GENE-EXPRESSION; CIRCADIAN CLOCK; DESIGN; NETWORK; MODELS; HES1; P53;
D O I
10.1021/acssynbio.7b00442
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Biological oscillators are present in nearly all self-regulating systems, from individual cells to entire organisms. In any oscillator structure, a negative feedback loop is necessary, but not sufficient to guarantee the emergence of periodic behaviors. The likelihood of oscillations can be improved by careful tuning of the system time constants and by increasing the loop gain, yet it is unclear whether there is any general relationship between optimal time constants and loop gain. This issue is particularly relevant in genetic oscillators resulting from a chain of different subsequent biochemical events, each with distinct (and uncertain) kinetics. Using two families of genetic oscillators as model examples, we show that the loop gain required for oscillations is minimum when all elements in the loop have the same time constant. On the contrary, we show that homeostasis is ensured if a single element is considerably slower than the others.
引用
收藏
页码:1481 / 1487
页数:13
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