miRNome Reveals New Insights Into the Molecular Biology of Field Cancerization in Gastric Cancer

被引:14
作者
Pereira, Adenilson [1 ,2 ]
Moreira, Fabiano [1 ,2 ]
Vinasco-Sandoval, Tatiana [2 ]
Cunha, Adenard [2 ]
Vidal, Amanda [2 ]
Ribeiro-dos-Santos, Andre M. [1 ]
Pinto, Pablo [1 ]
Magalhaes, Leandro [1 ]
Assumpcao, Monica [2 ]
Demachki, Samia [2 ]
Santos, Sidney [1 ,2 ]
Assumpcao, Paulo [2 ]
Ribeiro-dos-Santos, Andrea [1 ,2 ]
机构
[1] Fed Univ Para, Lab Human & Med Genet, Inst Biol Sci, Grad Program Genet & Mol Biol, Belem, Para, Brazil
[2] Fed Univ Para, Res Ctr Oncol, Grad Program Oncol & Med Sci, Belem, Para, Brazil
关键词
miRNome; miRNAs; gastric cancer; field cancerization; biomarkers; CELL-CYCLE PROGRESSION; INHIBITS PROLIFERATION; THERAPEUTIC TARGET; INVASION; SUPPRESSES; MIGRATION; PROMOTES; EXPRESSION; MICRORNAS; APOPTOSIS;
D O I
10.3389/fgene.2019.00592
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background: MicroRNAs (miRNAs) play an important role in gastric carcinogenesis and have been associated with gastric field cancerization; however, their role is not fully understood in this process. We performed the miRNome sequencing of non-cancerous, adjacent to tumor and gastric cancer samples to understand the involvement of these small RNAs in gastric field cancerization. Methods: We analyzed samples of patients without cancer as control (non-cancerous gastric samples) and adjacent to cancer and gastric cancer paired samples, and considered miRNAs with vertical bar log(2)(fold change)vertical bar > 2 and Padj < 0.05 to be statistically significant. The identification of target genes, functional analysis and enrichment in KEGG pathways were realized in the TargetCompare, miRTargetLink, and DAVID tools. We also performed receiver operating characteristic (ROC) curves and miRNAs that had an AUC > 0.85 were considered to be potential biomarkers. Results: We found 14 miRNAs exclusively deregulated in gastric cancer, of which six have potential diagnostic value for advanced disease. Nine miRNAs with known tumor suppressor activities (TS-miRs) were deregulated exclusively in adjacent tissue. Of these, five have potential diagnostic value for the early stages of gastric cancer. Functional analysis of these TS-miRs revealed that they regulate important cellular signaling pathways (PI3K-Akt, HIF-1, Ras, Rap1, ErbB, and MAPK signaling pathways), that are involved in gastric carcinogenesis. Seven miRNAs were differentially expressed in both gastric cancer and adjacent regarding to non-cancerous tissues; among them, hsa-miR-200a-3p and hsa-miR-873-5p have potential diagnostic value for early and advanced stages of the disease. Only hsa-miR-196a-5p was differentially expressed between adjacent to cancer and gastric cancer tissues. In addition, the other miRNAs identified in this study were not differentially expressed between adjacent to cancer and gastric cancer, suggesting that these tissues are very similar and that share these molecular changes. Conclusion: Our results show that gastric cancer and adjacent tissues have a similar miRNA expression profile, indicating that studied miRNAs are intimately associated with field cancerization in gastric cancer. The overexpression of TS-miRs in adjacent tissues may be a barrier against tumorigenesis within these pre-cancerous conditions prior to the eventual formation or relapse of a tumor. Additionally, these miRNAs have a great accuracy in discriminating non-cancerous from adjacent to tumor and cancer tissues and can be potentially useful as biomarkers for gastric cancer.
引用
收藏
页数:12
相关论文
共 94 条
  • [1] HTSeq-a Python']Python framework to work with high-throughput sequencing data
    Anders, Simon
    Pyl, Paul Theodor
    Huber, Wolfgang
    [J]. BIOINFORMATICS, 2015, 31 (02) : 166 - 169
  • [2] Estimating Asian Contribution to the Brazilian Population: A New Application of a Validated Set of 61 Ancestry Informative Markers
    Andrade, Roberta B.
    Amador, Marcos A. T.
    Cavalcante, Giovanna C.
    Leitao, Luciana P. C.
    Fernandes, Marianne R.
    Modesto, Antonio A. C.
    Moreira, Fabiano C.
    Khayat, Andre S.
    Assumpcao, Paulo P.
    Ribeiro-dos-Santos, Andrea
    Santos, Sidney
    Santos, Ney P. C.
    [J]. G3-GENES GENOMES GENETICS, 2018, 8 (11): : 3577 - 3582
  • [3] Comprehensive analysis of normal adjacent to tumor transcriptomes
    Aran, Dvir
    Camarda, Roman
    Odegaard, Justin
    Paik, Hyojung
    Oskotsky, Boris
    Krings, Gregor
    Goga, Andrei
    Sirota, Marina
    Butte, Atul J.
    [J]. NATURE COMMUNICATIONS, 2017, 8
  • [4] High-Throughput miRNA Sequencing Reveals a Field Effect in Gastric Cancer and Suggests an Epigenetic Network Mechanism
    Assumpcao, Monica B.
    Moreira, Fabiano C.
    Hamoy, Igor G.
    Magalhaes, Leandro
    Vidal, Amanda
    Pereira, Adenilson
    Burbano, Rommel
    Khayat, Andre
    Silva, Artur
    Santos, Sidney
    Demachki, Samia
    Ribeiro-dos-Santos, Andrea
    Assumpcao, Paulo
    [J]. BIOINFORMATICS AND BIOLOGY INSIGHTS, 2015, 9 : 111 - 117
  • [5] MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004)
    Bartel, David P.
    [J]. CELL, 2007, 131 (04) : 11 - 29
  • [6] MiR-873-5P controls gastric cancer progression by targeting hedgehog-GLI signaling
    Cao, Dazhong
    Yu, Ting
    Ou, Xilong
    [J]. PHARMAZIE, 2016, 71 (10): : 603 - 606
  • [7] Chai H, 2009, ANN CLIN LAB SCI, V39, P331
  • [8] Chen BB, 2017, INT J CLIN EXP PATHO, V10, P11106
  • [9] Chen XY, 2016, INT J CLIN EXP PATHO, V9, P10011
  • [10] Downregulated microRNA-200a promotes EMT and tumor growth through the Wnt/β-catenin pathway by targeting the E-cadherin repressors ZEB1/ZEB2 in gastric adenocarcinoma
    Cong, Ningning
    Du, Ping
    Zhang, Anling
    Shen, Fajuan
    Su, Juan
    Pu, Peiyu
    Wang, Tao
    Zjang, Jie
    Kang, Chunsheng
    Zhang, Qingyu
    [J]. ONCOLOGY REPORTS, 2013, 29 (04) : 1579 - 1587